Elizabeth M Batty
Elizabeth M Batty
Senior bioinformatician, Mahidol-Oxford Tropical Research Unit
Verified email at well.ox.ac.uk
TitleCited byYear
Diverse Sources of C. difficile Infection Identified on Whole-Genome Sequencing
DW Eyre, ML Cule, DJ Wilson, D Griffiths, A Vaughan, L O'Connor, CLC Ip, ...
New England Journal of Medicine 369 (13), 1195-1205, 2013
4692013
A pilot study of rapid benchtop sequencing of Staphylococcus aureus and Clostridium difficile for outbreak detection and surveillance
DW Eyre, T Golubchik, NC Gordon, R Bowden, P Piazza, EM Batty, ...
BMJ open 2 (3), e001124, 2012
2412012
Evolutionary dynamics of Staphylococcus aureus during progression from carriage to disease
BC Young, T Golubchik, EM Batty, R Fung, H Larner-Svensson, ...
Proceedings of the National Academy of Sciences 109 (12), 4550-4555, 2012
2212012
Predicting antimicrobial susceptibilities for Escherichia coli and Klebsiella pneumoniae isolates using whole genomic sequence data
N Stoesser, EM Batty, DW Eyre, M Morgan, DH Wyllie, C Del Ojo Elias, ...
Journal of Antimicrobial Chemotherapy 68 (10), 2234-2244, 2013
1802013
MinION Analysis and Reference Consortium: Phase 1 data release and analysis
CLC Ip, M Loose, JR Tyson, M de Cesare, BL Brown, M Jain, RM Leggett, ...
F1000Research 4, 2015
1752015
Microevolutionary analysis of Clostridium difficile genomes to investigate transmission
X Didelot, DW Eyre, M Cule, CLC Ip, MA Ansari, D Griffiths, A Vaughan, ...
Genome biology 13 (12), R118, 2012
1452012
Within-host evolution of Staphylococcus aureus during asymptomatic carriage
T Golubchik, EM Batty, RR Miller, H Farr, BC Young, H Larner-Svensson, ...
PloS one 8 (5), e61319, 2013
1332013
Evolutionary history of the global emergence of the Escherichia coli epidemic clone ST131
N Stoesser, AE Sheppard, L Pankhurst, N De Maio, CE Moore, R Sebra, ...
MBio 7 (2), e02162-15, 2016
1062016
Genome sequencing of an extended series of NDM-producing Klebsiella pneumoniae isolates from neonatal infections in a Nepali hospital characterizes the extent of community …
N Stoesser, A Giess, EM Batty, AE Sheppard, AS Walker, DJ Wilson, ...
Antimicrobial agents and chemotherapy 58 (12), 7347-7357, 2014
872014
Improved workflows for high throughput library preparation using the transposome-based Nextera system
S Lamble, E Batty, M Attar, D Buck, R Bowden, G Lunter, D Crook, ...
BMC biotechnology 13 (1), 104, 2013
802013
Mobile elements drive recombination hotspots in the core genome of Staphylococcus aureus
RG Everitt, X Didelot, EM Batty, RR Miller, K Knox, BC Young, R Bowden, ...
Nature communications 5, 3956, 2014
782014
Recombinational Switching of the Clostridium difficile S-Layer and a Novel Glycosylation Gene Cluster Revealed by Large-Scale Whole-Genome Sequencing
KE Dingle, X Didelot, MA Ansari, DW Eyre, A Vaughan, D Griffiths, CLC Ip, ...
The Journal of infectious diseases 207 (4), 675-686, 2012
672012
A modified RNA-Seq approach for whole genome sequencing of RNA viruses from faecal and blood samples
EM Batty, THN Wong, A Trebes, K Argoud, M Attar, D Buck, CLC Ip, ...
PloS one 8 (6), e66129, 2013
572013
The role of tandem duplicator phenotype in tumour evolution in high‐grade serous ovarian cancer
CKY Ng, SL Cooke, K Howe, S Newman, J Xian, J Temple, EM Batty, ...
The Journal of pathology 226 (5), 703-712, 2012
562012
Structural analysis of the genome of breast cancer cell line ZR-75-30 identifies twelve expressed fusion genes
I Schulte, EM Batty, JCM Pole, KA Blood, S Mo, SL Cooke, C Ng, ...
BMC genomics 13 (1), 719, 2012
442012
Large duplications at reciprocal translocation breakpoints that might be the counterpart of large deletions and could arise from stalled replication bubbles
KD Howarth, JCM Pole, JC Beavis, EM Batty, S Newman, GR Bignell, ...
Genome research 21 (4), 525-534, 2011
432011
Healthcare-associated outbreak of meticillin-resistant Staphylococcus aureus bacteraemia: role of a cryptic variant of an epidemic clone
RR Miller, JR Price, EM Batty, X Didelot, D Wyllie, T Golubchik, DW Crook, ...
Journal of Hospital Infection 86 (2), 83-89, 2014
302014
Modernizing Medical Microbiology Informatics Group (MMMIG). 2016
N Stoesser, AE Sheppard, L Pankhurst, N De Maio, CE Moore, R Sebra, ...
Evolutionary history of the global emergence of the Escherichia coli …, 0
27
Insights into platypus population structure and history from whole-genome sequencing
HC Martin, EM Batty, J Hussin, P Westall, T Daish, S Kolomyjec, P Piazza, ...
Molecular biology and evolution 35 (5), 1238-1252, 2018
72018
Long-read whole genome sequencing and comparative analysis of six strains of the human pathogen Orientia tsutsugamushi
EM Batty, S Chaemchuen, S Blacksell, AL Richards, D Paris, R Bowden, ...
PLoS neglected tropical diseases 12 (6), e0006566, 2018
32018
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Articles 1–20