Transcriptional profiling of long non-coding RNAs and novel transcribed regions across a diverse panel of archived human cancers AL Brunner, AH Beck, B Edris, RT Sweeney, SX Zhu, R Li, K Montgomery, ... Genome biology 13, 1-13, 2012 | 269 | 2012 |
3′-end sequencing for expression quantification (3SEQ) from archival tumor samples AH Beck, Z Weng, DM Witten, S Zhu, JW Foley, P Lacroute, CL Smith, ... PloS one 5 (1), e8768, 2010 | 144 | 2010 |
Gene expression profiling of single cells from archival tissue with laser-capture microdissection and Smart-3SEQ JW Foley, C Zhu, P Jolivet, SX Zhu, P Lu, MJ Meaney, RB West Genome research 29 (11), 1816-1825, 2019 | 112 | 2019 |
Widespread shortening of 3’untranslated regions and increased exon inclusion are evolutionarily conserved features of innate immune responses to infection AA Pai, G Baharian, A Pagé Sabourin, JF Brinkworth, Y Nédélec, ... PLoS genetics 12 (9), e1006338, 2016 | 97 | 2016 |
A plant effector‐triggered immunity signaling sector is inhibited by pattern‐triggered immunity N Hatsugai, D Igarashi, K Mase, Y Lu, Y Tsuda, S Chakravarthy, HL Wei, ... The EMBO Journal 36 (18), 2758-2769, 2017 | 80 | 2017 |
HEB associates with PRC2 and SMAD2/3 to regulate developmental fates SJ Yoon, JW Foley, JC Baker Nature communications 6 (1), 6546, 2015 | 44 | 2015 |
Transcription-factor occupancy at HOT regions quantitatively predicts RNA polymerase recruitment in five human cell lines JW Foley, A Sidow BMC genomics 14, 1-17, 2013 | 41 | 2013 |
Genomic analysis of benign prostatic hyperplasia implicates cellular relandscaping in disease pathogenesis LW Middleton, Z Shen, S Varma, AS Pollack, X Gong, S Zhu, C Zhu, ... JCI insight 4 (12), 2019 | 36 | 2019 |
The Hsp70 and Hsp40 Chaperones Influence Microtubule Stability in Chlamydomonas CD Silflow, X Sun, NA Haas, JW Foley, PA Lefebvre Genetics 189 (4), 1249-1260, 2011 | 20 | 2011 |
Activities of the Porphyromonas gingivalis PrtP Proteinase Determined by Construction ofprtP-Deficient Mutants and Expression of the Gene inBacteroides Species GA Barkocy-Gallagher, JW Foley, MS Lantz Journal of bacteriology 181 (1), 246-255, 1999 | 18 | 1999 |
The latency-associated transcript locus of herpes simplex virus 1 is a virulence determinant in human skin EAH Vanni, JW Foley, AJ Davison, M Sommer, D Liu, P Sung, J Moffat, ... PLoS Pathogens 16 (12), e1009166, 2020 | 14 | 2020 |
The microdissected gene expression landscape of nasopharyngeal cancer reveals vulnerabilities in FGF and noncanonical NF-κB signaling JK Tay, C Zhu, JH Shin, SX Zhu, S Varma, JW Foley, S Vennam, YL Yip, ... Science Advances 8 (14), eabh2445, 2022 | 10 | 2022 |
Solutions for purifying nucleic acids by solid-phase reversible immobilization (SPRI) P Jolivet, JW Foley Ludmer Centre for Neuroinfor matics and Mental Health, Montreal, QC, 2015 | 9 | 2015 |
Unsupervised reduction of random noise in complex data by a row-specific, sorted principal component-guided method J Foley, F Katagiri BMC bioinformatics 9 (1), 508, 2008 | 7 | 2008 |
Transcriptome and genome evolution during HER2-amplified breast neoplasia P Lu, J Foley, C Zhu, K McNamara, K Sirinukunwattana, S Vennam, ... Breast Cancer Research 23, 1-15, 2021 | 3 | 2021 |
SPRI bead mix P Jolivet, JW Foley | 2 | 2020 |
Gene expression signatures from FFPE to predict recurrent metastatic nasopharyngeal cancer JK Tay, WK Teo, JW Foley, L Suryani, BC Wu, CH Siow, KS Loh Cancer Research 84 (6_Supplement), 5660-5660, 2024 | | 2024 |
Cost-effective DNA methylation profiling by FML-seq JW Foley, SX Zhu, RB West Life Science Alliance 6 (12), 2023 | | 2023 |
Abstract PD2-09: Characterization of the lymphovascular invasion microenvironment reveals immune response dichotomy B Rivero-Gutiérrez, D Mallo, A Espín-Pérez, S Vennam, C Zhu, S Varma, ... Cancer Research 83 (5_Supplement), PD2-09-PD2-09, 2023 | | 2023 |