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Joseph W Foley
Joseph W Foley
Research Engineer, Pathology, Stanford University School of Medicine
Verified email at stanford.edu
Title
Cited by
Cited by
Year
Transcriptional profiling of long non-coding RNAs and novel transcribed regions across a diverse panel of archived human cancers
AL Brunner, AH Beck, B Edris, RT Sweeney, SX Zhu, R Li, K Montgomery, ...
Genome biology 13, 1-13, 2012
2692012
3′-end sequencing for expression quantification (3SEQ) from archival tumor samples
AH Beck, Z Weng, DM Witten, S Zhu, JW Foley, P Lacroute, CL Smith, ...
PloS one 5 (1), e8768, 2010
1442010
Gene expression profiling of single cells from archival tissue with laser-capture microdissection and Smart-3SEQ
JW Foley, C Zhu, P Jolivet, SX Zhu, P Lu, MJ Meaney, RB West
Genome research 29 (11), 1816-1825, 2019
1122019
Widespread shortening of 3’untranslated regions and increased exon inclusion are evolutionarily conserved features of innate immune responses to infection
AA Pai, G Baharian, A Pagé Sabourin, JF Brinkworth, Y Nédélec, ...
PLoS genetics 12 (9), e1006338, 2016
972016
A plant effector‐triggered immunity signaling sector is inhibited by pattern‐triggered immunity
N Hatsugai, D Igarashi, K Mase, Y Lu, Y Tsuda, S Chakravarthy, HL Wei, ...
The EMBO Journal 36 (18), 2758-2769, 2017
802017
HEB associates with PRC2 and SMAD2/3 to regulate developmental fates
SJ Yoon, JW Foley, JC Baker
Nature communications 6 (1), 6546, 2015
442015
Transcription-factor occupancy at HOT regions quantitatively predicts RNA polymerase recruitment in five human cell lines
JW Foley, A Sidow
BMC genomics 14, 1-17, 2013
412013
Genomic analysis of benign prostatic hyperplasia implicates cellular relandscaping in disease pathogenesis
LW Middleton, Z Shen, S Varma, AS Pollack, X Gong, S Zhu, C Zhu, ...
JCI insight 4 (12), 2019
362019
The Hsp70 and Hsp40 Chaperones Influence Microtubule Stability in Chlamydomonas
CD Silflow, X Sun, NA Haas, JW Foley, PA Lefebvre
Genetics 189 (4), 1249-1260, 2011
202011
Activities of the Porphyromonas gingivalis PrtP Proteinase Determined by Construction ofprtP-Deficient Mutants and Expression of the Gene inBacteroides Species
GA Barkocy-Gallagher, JW Foley, MS Lantz
Journal of bacteriology 181 (1), 246-255, 1999
181999
The latency-associated transcript locus of herpes simplex virus 1 is a virulence determinant in human skin
EAH Vanni, JW Foley, AJ Davison, M Sommer, D Liu, P Sung, J Moffat, ...
PLoS Pathogens 16 (12), e1009166, 2020
142020
The microdissected gene expression landscape of nasopharyngeal cancer reveals vulnerabilities in FGF and noncanonical NF-κB signaling
JK Tay, C Zhu, JH Shin, SX Zhu, S Varma, JW Foley, S Vennam, YL Yip, ...
Science Advances 8 (14), eabh2445, 2022
102022
Solutions for purifying nucleic acids by solid-phase reversible immobilization (SPRI)
P Jolivet, JW Foley
Ludmer Centre for Neuroinfor matics and Mental Health, Montreal, QC, 2015
92015
Unsupervised reduction of random noise in complex data by a row-specific, sorted principal component-guided method
J Foley, F Katagiri
BMC bioinformatics 9 (1), 508, 2008
72008
Transcriptome and genome evolution during HER2-amplified breast neoplasia
P Lu, J Foley, C Zhu, K McNamara, K Sirinukunwattana, S Vennam, ...
Breast Cancer Research 23, 1-15, 2021
32021
SPRI bead mix
P Jolivet, JW Foley
22020
Gene expression signatures from FFPE to predict recurrent metastatic nasopharyngeal cancer
JK Tay, WK Teo, JW Foley, L Suryani, BC Wu, CH Siow, KS Loh
Cancer Research 84 (6_Supplement), 5660-5660, 2024
2024
Cost-effective DNA methylation profiling by FML-seq
JW Foley, SX Zhu, RB West
Life Science Alliance 6 (12), 2023
2023
Abstract PD2-09: Characterization of the lymphovascular invasion microenvironment reveals immune response dichotomy
B Rivero-Gutiérrez, D Mallo, A Espín-Pérez, S Vennam, C Zhu, S Varma, ...
Cancer Research 83 (5_Supplement), PD2-09-PD2-09, 2023
2023
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