Joseph W Foley
Joseph W Foley
Postdoctoral fellow, Pathology, Stanford University School of Medicine
Verified email at
TitleCited byYear
Transcriptional profiling of long non-coding RNAs and novel transcribed regions across a diverse panel of archived human cancers
AL Brunner, AH Beck, B Edris, RT Sweeney, SX Zhu, R Li, K Montgomery, ...
Genome biology 13 (8), R75, 2012
3′-end sequencing for expression quantification (3SEQ) from archival tumor samples
AH Beck, Z Weng, DM Witten, S Zhu, JW Foley, P Lacroute, CL Smith, ...
PloS one 5 (1), e8768, 2010
Transcription-factor occupancy at HOT regions quantitatively predicts RNA polymerase recruitment in five human cell lines
JW Foley, A Sidow
BMC genomics 14 (1), 720, 2013
A plant effector‐triggered immunity signaling sector is inhibited by pattern‐triggered immunity
N Hatsugai, D Igarashi, K Mase, Y Lu, Y Tsuda, S Chakravarthy, HL Wei, ...
The EMBO journal 36 (18), 2758-2769, 2017
HEB associates with PRC2 and SMAD2/3 to regulate developmental fates
SJ Yoon, JW Foley, JC Baker
Nature communications 6, 6546, 2015
Widespread shortening of 3’untranslated regions and increased exon inclusion are evolutionarily conserved features of innate immune responses to infection
AA Pai, G Baharian, AP Sabourin, JF Brinkworth, Y Nédélec, JW Foley, ...
PLoS genetics 12 (9), e1006338, 2016
The Hsp70 and Hsp40 chaperones influence microtubule stability in Chlamydomonas
CD Silflow, X Sun, NA Haas, JW Foley, PA Lefebvre
Genetics 189 (4), 1249-1260, 2011
Unsupervised reduction of random noise in complex data by a row-specific, sorted principal component-guided method
J Foley, F Katagiri
BMC bioinformatics 9 (1), 508, 2008
Gene-expression profiling of single cells from archival tissue with laser-capture microdissection and Smart-3SEQ
JW Foley, C Zhu, P Jolivet, SX Zhu, P Lu, MJ Meaney, RB West
bioRxiv, 207340, 2018
Solutions for purifying nucleic acids by solidphase reversible immobilization (SPRI)
P Jolivet, JW Foley
Ludmer Center, Neuroinfromatics & Mental Health, 1-6, 2015
Genomic analysis of benign prostatic hyperplasia implicates cellular re-landscaping in disease pathogenesis
LW Middleton, Z Shen, S Varma, AS Pollack, X Gong, S Zhu, C Zhu, ...
JCI insight, 2019
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