|Transcriptional profiling of long non-coding RNAs and novel transcribed regions across a diverse panel of archived human cancers|
AL Brunner, AH Beck, B Edris, RT Sweeney, SX Zhu, R Li, K Montgomery, ...
Genome biology 13 (8), R75, 2012
|3′-end sequencing for expression quantification (3SEQ) from archival tumor samples|
AH Beck, Z Weng, DM Witten, S Zhu, JW Foley, P Lacroute, CL Smith, ...
PloS one 5 (1), e8768, 2010
|Transcription-factor occupancy at HOT regions quantitatively predicts RNA polymerase recruitment in five human cell lines|
JW Foley, A Sidow
BMC genomics 14 (1), 720, 2013
|A plant effector‐triggered immunity signaling sector is inhibited by pattern‐triggered immunity|
N Hatsugai, D Igarashi, K Mase, Y Lu, Y Tsuda, S Chakravarthy, HL Wei, ...
The EMBO journal 36 (18), 2758-2769, 2017
|HEB associates with PRC2 and SMAD2/3 to regulate developmental fates|
SJ Yoon, JW Foley, JC Baker
Nature communications 6, 6546, 2015
|Widespread shortening of 3’untranslated regions and increased exon inclusion are evolutionarily conserved features of innate immune responses to infection|
AA Pai, G Baharian, AP Sabourin, JF Brinkworth, Y Nédélec, JW Foley, ...
PLoS genetics 12 (9), e1006338, 2016
|The Hsp70 and Hsp40 chaperones influence microtubule stability in Chlamydomonas|
CD Silflow, X Sun, NA Haas, JW Foley, PA Lefebvre
Genetics 189 (4), 1249-1260, 2011
|Unsupervised reduction of random noise in complex data by a row-specific, sorted principal component-guided method|
J Foley, F Katagiri
BMC bioinformatics 9 (1), 508, 2008
|Gene-expression profiling of single cells from archival tissue with laser-capture microdissection and Smart-3SEQ|
JW Foley, C Zhu, P Jolivet, SX Zhu, P Lu, MJ Meaney, RB West
bioRxiv, 207340, 2019
|Solutions for purifying nucleic acids by solid-phase reversible immobilization (SPRI)|
P Jolivet, JW Foley
Ludmer Center, Neuroinfromatics & Mental Health, 1-6, 2015
|Genomic analysis of benign prostatic hyperplasia implicates cellular re-landscaping in disease pathogenesis|
LW Middleton, Z Shen, S Varma, AS Pollack, X Gong, S Zhu, C Zhu, ...
JCI insight, 2019