Jens Kleinjung
Jens Kleinjung
Sosei Heptares
Verified email at jkleinj.eu - Homepage
TitleCited byYear
POPS: a fast algorithm for solvent accessible surface areas at atomic and residue level
L Cavallo, J Kleinjung, F Fraternali
Nucleic acids research 31 (13), 3364-3366, 2003
1942003
In vitro generation of neuromesodermal progenitors reveals distinct roles for wnt signalling in the specification of spinal cord and paraxial mesoderm identity
M Gouti, A Tsakiridis, FJ Wymeersch, Y Huang, J Kleinjung, V Wilson, ...
PLoS biology 12 (8), e1001937, 2014
1342014
Homology-extended sequence alignment
VA Simossis, J Kleinjung, J Heringa
Nucleic acids research 33 (3), 816-824, 2005
1132005
Genome editing reveals a role for OCT4 in human embryogenesis
NME Fogarty, A McCarthy, KE Snijders, BE Powell, N Kubikova, ...
Nature 550 (7674), 67, 2017
1102017
Detection of allosteric signal transmission by information-theoretic analysis of protein dynamics
A Pandini, A Fornili, F Fraternali, J Kleinjung
The FASEB journal 26 (2), 868-881, 2012
842012
Plasticity of influenza haemagglutinin fusion peptides and their interaction with lipid bilayers
L Vaccaro, KJ Cross, J Kleinjung, SK Straus, DJ Thomas, SA Wharton, ...
Biophysical journal 88 (1), 25-36, 2005
802005
Design and application of implicit solvent models in biomolecular simulations
J Kleinjung, F Fraternali
Current opinion in structural biology 25, 126-134, 2014
732014
Parallelized multiple alignment
J Kleinjung, N Douglas, J Heringa
Bioinformatics 18 (9), 1270-1271, 2002
562002
Structural alphabets derived from attractors in conformational space
A Pandini, A Fornili, J Kleinjung
Bmc Bioinformatics 11 (1), 97, 2010
512010
Malaria parasite actin polymerization and filament structure
S Schmitz, IAT Schaap, J Kleinjung, S Harder, M Grainger, L Calder, ...
Journal of Biological Chemistry 285 (47), 36577-36585, 2010
512010
A gene regulatory network balances neural and mesoderm specification during vertebrate trunk development
M Gouti, J Delile, D Stamataki, FJ Wymeersch, Y Huang, J Kleinjung, ...
Developmental cell 41 (3), 243-261. e7, 2017
482017
Tailored graph ensembles as proxies or null models for real networks I: tools for quantifying structure
A Annibale, ACC Coolen, LP Fernandes, F Fraternali, J Kleinjung
Journal of Physics A: Mathematical and Theoretical 42 (48), 485001, 2009
422009
POPSCOMP: an automated interaction analysis of biomolecular complexes
J Kleinjung, F Fraternali
Nucleic acids research 33 (suppl_2), W342-W346, 2005
372005
GSATools: analysis of allosteric communication and functional local motions using a structural alphabet
A Pandini, A Fornili, F Fraternali, J Kleinjung
Bioinformatics 29 (16), 2053-2055, 2013
362013
Protein networks reveal detection bias and species consistency when analysed by information-theoretic methods
LP Fernandes, A Annibale, J Kleinjung, ACC Coolen, F Fraternali
PloS one 5 (8), e12083, 2010
282010
Testing homology with Contact Accepted mutatiOn (CAO): a contact-based Markov model of protein evolution
K Lin, J Kleinjung, WR Taylor, J Heringa
Computational biology and chemistry 27 (2), 93-102, 2003
282003
Lineage-dependent spatial and functional organization of the mammalian enteric nervous system
R Lasrado, W Boesmans, J Kleinjung, C Pin, D Bell, L Bhaw, S McCallum, ...
Science 356 (6339), 722-726, 2017
262017
STRIKE: evaluation of protein MSAs using a single 3D structure
C Kemena, JF Taly, J Kleinjung, C Notredame
Bioinformatics 27 (24), 3385-3391, 2011
262011
An overview of multiple sequence alignment
V Simossis, J Kleinjung, J Heringa
Current protocols in bioinformatics 3 (1), 3.7. 1-3.7. 26, 2003
262003
Contact‐based sequence alignment
J Kleinjung, J Romein, K Lin, J Heringa
Nucleic acids research 32 (8), 2464-2473, 2004
232004
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Articles 1–20