Angelika Merkel
Angelika Merkel
Centro Nacional de Análisis Genómico (CNAG-CRG)
Verified email at cnag.crg.es
TitleCited byYear
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57, 2012
90282012
Landscape of transcription in human cells
S Djebali, CA Davis, A Merkel, A Dobin, T Lassmann, A Mortazavi, ...
Nature 489 (7414), 101, 2012
30822012
The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression
T Derrien, R Johnson, G Bussotti, A Tanzer, S Djebali, H Tilgner, ...
Genome research 22 (9), 1775-1789, 2012
29272012
A user's guide to the encyclopedia of DNA elements (ENCODE)
ENCODE Project Consortium
PLoS Biol 9 (4), e1001046, 2011
10852011
Genome analysis of the platypus reveals unique signatures of evolution
WC Warren, LDW Hillier, JAM Graves, E Birney, CP Ponting, F Grützner, ...
Nature 453 (7192), 175, 2008
6482008
Whole-genome fingerprint of the DNA methylome during human B cell differentiation
M Kulis, A Merkel, S Heath, AC Queirós, RP Schuyler, G Castellano, ...
Nature genetics 47 (7), 746, 2015
1472015
Whole-epigenome analysis in multiple myeloma reveals DNA hypermethylation of B cell-specific enhancers
X Agirre, G Castellano, M Pascual, S Heath, M Kulis, V Segura, ...
Genome research 25 (4), 478-487, 2015
792015
Detecting short tandem repeats from genome data: opening the software black box
A Merkel, N Gemmell
Briefings in bioinformatics 9 (5), 355-366, 2008
692008
Comprehensive genome and epigenome characterization of CHO cells in response to evolutionary pressures and over time
J Feichtinger, I Hernández, C Fischer, M Hanscho, N Auer, M Hackl, ...
Biotechnology and bioengineering 113 (10), 2241-2253, 2016
592016
Decoding the DNA methylome of mantle cell lymphoma in the light of the entire B cell lineage
AC Queirós, R Beekman, R Vilarrasa-Blasi, M Duran-Ferrer, G Clot, ...
Cancer Cell 30 (5), 806-821, 2016
482016
Genome-wide analysis of differential transcriptional and epigenetic variability across human immune cell types
S Ecker, L Chen, V Pancaldi, FO Bagger, JM Fernández, ...
Genome biology 18 (1), 18, 2017
472017
Grape RNA-Seq analysis pipeline environment
DG Knowles, M Röder, A Merkel, R Guigó
Bioinformatics 29 (5), 614-621, 2013
272013
Detecting microsatellites in genome data: variance in definitions and bioinformatic approaches cause systematic bias
A Merkel, NJ Gemmell, A Merkel, NJ Gemmell
Evolutionary Bioinformatics 4, EBO. S420, 2008
272008
The reference epigenome and regulatory chromatin landscape of chronic lymphocytic leukemia
R Beekman, V Chapaprieta, N Russińol, R Vilarrasa-Blasi, ...
Nature medicine 24 (6), 868, 2018
222018
Distinct trends of DNA methylation patterning in the innate and adaptive immune systems
RP Schuyler, A Merkel, E Raineri, L Altucci, E Vellenga, JHA Martens, ...
Cell reports 17 (8), 2101-2111, 2016
212016
Dynamics of transcription regulation in human bone marrow myeloid differentiation to mature blood neutrophils
L Grassi, F Pourfarzad, S Ullrich, A Merkel, F Were, ...
Cell reports 24 (10), 2784-2794, 2018
122018
Evolution of microsatellite DNA
IMV Jentzsch, ATM Bagshaw, E Buschiazzo, A Merkel, NJ Gemmell
eLS, 2001
112001
Chromatin-based classification of genetically heterogeneous AMLs into two distinct subtypes with diverse stemness phenotypes
G Yi, ATJ Wierenga, F Petraglia, P Narang, EM Janssen-Megens, ...
Cell reports 26 (4), 1059-1069. e6, 2019
72019
gemBS: high throughput processing for DNA methylation data from bisulfite sequencing
A Merkel, M Fernández-Callejo, E Casals, S Marco-Sola, R Schuyler, ...
Bioinformatics 35 (5), 737-742, 2018
72018
Epigenetic regulation of gene expression in Chinese Hamster Ovary cells in response to the changing environment of a batch culture
I Hernandez, H Dhiman, G Klanert, V Jadhav, N Auer, M Hanscho, ...
Biotechnology and bioengineering 116 (3), 677-692, 2019
42019
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