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Jacob Nearing
Jacob Nearing
Verified email at broadinstitute.org
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Cited by
Year
Microbiome differential abundance methods produce different results across 38 datasets
JT Nearing, GM Douglas, MG Hayes, J MacDonald, DK Desai, N Allward, ...
Nature communications 13 (1), 342, 2022
4002022
Denoising the Denoisers: an independent evaluation of microbiome sequence error-correction approaches
JT Nearing, GM Douglas, AM Comeau, MGI Langille
PeerJ 6, e5364, 2018
319*2018
Identifying biases and their potential solutions in human microbiome studies
JT Nearing, AM Comeau, MGI Langille
Microbiome 9 (1), 113, 2021
1192021
Harnessing the plant microbiome to promote the growth of agricultural crops
J Zhang, J Cook, JT Nearing, J Zhang, R Raudonis, BR Glick, ...
Microbiological Research 245, 126690, 2021
1142021
Infectious complications are associated with alterations in the gut microbiome in pediatric patients with acute lymphoblastic leukemia
JT Nearing, J Connors, S Whitehouse, J Van Limbergen, T Macdonald, ...
Frontiers in cellular and infection microbiology 9, 28, 2019
542019
Assessing the variation within the oral microbiome of healthy adults
JT Nearing, V DeClercq, J Van Limbergen, MGI Langille
mSphere, 2020
482020
Metagenomic functional shifts to plant induced environmental changes
SN Yurgel, JT Nearing, GM Douglas, MGI Langille
Frontiers in microbiology 10, 1682, 2019
402019
Plant-based diets and cancer risk: what is the evidence?
V DeClercq, JT Nearing, E Sweeney
Current nutrition reports 11 (2), 354-369, 2022
162022
Investigation of the impact of commonly used medications on the oral microbiome of individuals living without major chronic conditions
V DeClercq, JT Nearing, MGI Langille
PLoS One 16 (12), e0261032, 2021
102021
Implications of taxonomic bias for microbial differential-abundance analysis
MR McLaren, JT Nearing, AD Willis, KG Lloyd, BJ Callahan
bioRxiv, 2022.08. 19.504330, 2022
82022
An in vivo genome‐wide shRNA screen identifies BCL6 as a targetable biomarker of paclitaxel resistance in breast cancer
M Sultan, JT Nearing, JM Brown, TT Huynh, BM Cruickshank, ...
Molecular Oncology 15 (8), 2046-2064, 2021
62021
Investigating the gut microbial community and genes in children with differing levels of change in serum asparaginase activity during pegaspargase treatment for acute …
KA Dunn, J Connors, JP Bielawski, JT Nearing, MGI Langille, ...
Leukemia & lymphoma 62 (4), 927-936, 2021
62021
Investigating the oral microbiome in retrospective and prospective cases of prostate, colon, and breast cancer
JT Nearing, V DeClercq, MGI Langille
npj Biofilms and Microbiomes 9 (1), 23, 2023
42023
The effect of oral iron supplementation on gut microbial composition: a secondary analysis of a double-blind, randomized controlled trial among Cambodian women of reproductive age
E Finlayson-Trick, J Nearing, JAJ Fischer, Y Ma, S Wang, H Krouen, ...
Microbiology Spectrum 11 (3), e05273-22, 2023
22023
Oral microbial signatures associated with age and frailty in Canadian adults
V DeClercq, RJ Wright, JT Nearing, MGI Langille
2023
IDENTIFCATION OF ROBUST BIOMARKERS USING MICROBIOME DNA SEQUENCING WITH A FOCUS ON THE ORAL MICROBIOME AND CANCER ASSOCIATIONS
JT Nearing
2022
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