Simon R. Harris
Simon R. Harris
Senior Staff Scientist, Wellcome Sanger Institute
Verified email at sanger.ac.uk
TitleCited byYear
A tale of three next generation sequencing platforms: comparison of Ion torrent, pacific biosciences and illumina MiSeq sequencers
M Quail, ME Smith, P Coupland, TD Otto, SR Harris, TR Connor, A Bertoni, ...
BMC genomics 13 (1), 341, 2012
16102012
Evolution of MRSA during hospital transmission and intercontinental spread
SR Harris, EJ Feil, MTG Holden, MA Quail, EK Nickerson, N Chantratita, ...
Science 327 (5964), 469-474, 2010
9762010
Rapid pneumococcal evolution in response to clinical interventions
NJ Croucher, SR Harris, C Fraser, MA Quail, J Burton, M van der Linden, ...
Science 331 (6016), 430-434, 2011
7262011
Out-of-Africa migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans
I Comas, M Coscolla, T Luo, S Borrell, KE Holt, M Kato-Maeda, J Parkhill, ...
Nature genetics 45 (10), 1176-1182, 2013
6322013
Rapid whole-genome sequencing for investigation of a neonatal MRSA outbreak
CU Köser, MTG Holden, MJ Ellington, EJP Cartwright, NM Brown, ...
New England Journal of Medicine 366 (24), 2267-2275, 2012
5632012
Emergence and global spread of epidemic healthcare-associated Clostridium difficile
M He, F Miyajima, P Roberts, L Ellison, DJ Pickard, MJ Martin, TR Connor, ...
Nature Genetics, 2012
5042012
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
NJ Croucher, AJ Page, TR Connor, AJ Delaney, JA Keane, SD Bentley, ...
Nucleic acids research 43 (3), e15-e15, 2015
4512015
Evidence for several waves of global transmission in the seventh cholera pandemic
A Mutreja, DW Kim, NR Thomson, TR Connor, JH Lee, S Kariuki, ...
Nature 477 (7365), 462-465, 2011
4402011
Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data
T Carver, SR Harris, M Berriman, J Parkhill, JA McQuillan
Bioinformatics 28 (4), 464-469, 2012
4392012
Whole-genome sequencing for analysis of an outbreak of meticillin-resistant Staphylococcus aureus: a descriptive study
SR Harris, EJP Cartwright, ME Török, MTG Holden, NM Brown, ...
The Lancet Infectious Diseases 13 (2), 130-136, 2013
4292013
Whole-genome sequencing to identify transmission of <i>Mycobacterium abscessus</i> between patients with cystic fibrosis: a retrospective cohort study
JM Bryant, DM Grogono, D Greaves, J Foweraker, I Roddick, T Inns, ...
The Lancet, 2013
4012013
Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens
MW Silby, AM Cerdeńo-Tárraga, GS Vernikos, SR Giddens, RW Jackson, ...
Genome biology 10 (5), 1, 2009
3352009
Evolution and transmission of drug-resistant tuberculosis in a Russian population
N Casali, V Nikolayevskyy, Y Balabanova, SR Harris, O Ignatyeva, ...
Nature genetics 46 (3), 279-286, 2014
3332014
The archaebacterial origin of eukaryotes
CJ Cox, PG Foster, RP Hirt, SR Harris, TM Embley
Proceedings of the National Academy of Sciences 105 (51), 20356-20361, 2008
3162008
A genomic portrait of the emergence, evolution and global spread of a methicillin resistant Staphylococcus aureus pandemic
MTG Holden, LY Hsu, K Kurt, LA Weinert, AE Mather, SR Harris, ...
Genome Research, 2013
3062013
Pre-Columbian mycobacterial genomes reveal seals as a source of New World human tuberculosis
KI Bos, KM Harkins, A Herbig, M Coscolla, N Weber, I Comas, SA Forrest, ...
Nature 514 (7523), 494-497, 2014
2672014
Intracontinental spread of human invasive Salmonella Typhimurium pathovariants in sub-Saharan Africa
CK Okoro, RA Kingsley, TR Connor, SR Harris, CM Parry, ...
Nature Genetics, 2012
2512012
Whole-genome analysis of diverse Chlamydia trachomatis strains identifies phylogenetic relationships masked by current clinical typing
SR Harris, IN Clarke, HMB Seth-Smith, AW Solomon, LT Cutcliffe, ...
Nature Genetics, 2012
2382012
Dense genomic sampling identifies highways of pneumococcal recombination
C Chewapreecha, SR Harris, NJ Croucher, C Turner, P Marttinen, ...
Nature genetics 46 (3), 305-309, 2014
2312014
Distinguishable epidemics of multidrug-resistant Salmonella Typhimurium DT104 in different hosts
AE Mather, SWJ Reid, DJ Maskell, J Parkhill, MC Fookes, SR Harris, ...
Science 341 (6153), 1514-1517, 2013
2202013
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Articles 1–20