Simon R. Harris
Simon R. Harris
Senior Staff Scientist, Wellcome Sanger Institute
Verified email at sanger.ac.uk
TitleCited byYear
A tale of three next generation sequencing platforms: comparison of Ion torrent, pacific biosciences and illumina MiSeq sequencers
M Quail, ME Smith, P Coupland, TD Otto, SR Harris, TR Connor, A Bertoni, ...
BMC genomics 13 (1), 341, 2012
16852012
Evolution of MRSA during hospital transmission and intercontinental spread
SR Harris, EJ Feil, MTG Holden, MA Quail, EK Nickerson, N Chantratita, ...
Science 327 (5964), 469-474, 2010
10052010
Rapid pneumococcal evolution in response to clinical interventions
NJ Croucher, SR Harris, C Fraser, MA Quail, J Burton, M van der Linden, ...
Science 331 (6016), 430-434, 2011
7462011
Out-of-Africa migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans
I Comas, M Coscolla, T Luo, S Borrell, KE Holt, M Kato-Maeda, J Parkhill, ...
Nature genetics 45 (10), 1176-1182, 2013
6792013
Rapid whole-genome sequencing for investigation of a neonatal MRSA outbreak
CU Köser, MTG Holden, MJ Ellington, EJP Cartwright, NM Brown, ...
New England Journal of Medicine 366 (24), 2267-2275, 2012
5842012
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
NJ Croucher, AJ Page, TR Connor, AJ Delaney, JA Keane, SD Bentley, ...
Nucleic acids research 43 (3), e15-e15, 2015
5282015
Emergence and global spread of epidemic healthcare-associated Clostridium difficile
M He, F Miyajima, P Roberts, L Ellison, DJ Pickard, MJ Martin, TR Connor, ...
Nature Genetics, 2012
5242012
Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data
T Carver, SR Harris, M Berriman, J Parkhill, JA McQuillan
Bioinformatics 28 (4), 464-469, 2012
4702012
Evidence for several waves of global transmission in the seventh cholera pandemic
A Mutreja, DW Kim, NR Thomson, TR Connor, JH Lee, S Kariuki, ...
Nature 477 (7365), 462-465, 2011
4632011
Whole-genome sequencing for analysis of an outbreak of meticillin-resistant Staphylococcus aureus: a descriptive study
SR Harris, EJP Cartwright, ME Török, MTG Holden, NM Brown, ...
The Lancet Infectious Diseases 13 (2), 130-136, 2013
4432013
Whole-genome sequencing to identify transmission of <i>Mycobacterium abscessus</i> between patients with cystic fibrosis: a retrospective cohort study
JM Bryant, DM Grogono, D Greaves, J Foweraker, I Roddick, T Inns, ...
The Lancet, 2013
4152013
Evolution and transmission of drug-resistant tuberculosis in a Russian population
N Casali, V Nikolayevskyy, Y Balabanova, SR Harris, O Ignatyeva, ...
Nature genetics 46 (3), 279-286, 2014
3442014
Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens
MW Silby, AM Cerdeńo-Tárraga, GS Vernikos, SR Giddens, RW Jackson, ...
Genome biology 10 (5), 1, 2009
3382009
A genomic portrait of the emergence, evolution and global spread of a methicillin resistant Staphylococcus aureus pandemic
MTG Holden, LY Hsu, K Kurt, LA Weinert, AE Mather, SR Harris, ...
Genome Research, 2013
3202013
The archaebacterial origin of eukaryotes
CJ Cox, PG Foster, RP Hirt, SR Harris, TM Embley
Proceedings of the National Academy of Sciences 105 (51), 20356-20361, 2008
3202008
Pre-Columbian mycobacterial genomes reveal seals as a source of New World human tuberculosis
KI Bos, KM Harkins, A Herbig, M Coscolla, N Weber, I Comas, SA Forrest, ...
Nature 514 (7523), 494-497, 2014
2832014
Intracontinental spread of human invasive Salmonella Typhimurium pathovariants in sub-Saharan Africa
CK Okoro, RA Kingsley, TR Connor, SR Harris, CM Parry, ...
Nature Genetics, 2012
2672012
Dense genomic sampling identifies highways of pneumococcal recombination
C Chewapreecha, SR Harris, NJ Croucher, C Turner, P Marttinen, ...
Nature genetics 46 (3), 305-309, 2014
2512014
Whole-genome analysis of diverse Chlamydia trachomatis strains identifies phylogenetic relationships masked by current clinical typing
SR Harris, IN Clarke, HMB Seth-Smith, AW Solomon, LT Cutcliffe, ...
Nature Genetics, 2012
2482012
Circlator: automated circularization of genome assemblies using long sequencing reads
M Hunt, N De Silva, TD Otto, J Parkhill, JA Keane, SR Harris
Genome biology 16 (1), 1-10, 2015
2442015
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Articles 1–20