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Emma B Hodcroft
Emma B Hodcroft
Assistant Professor, Swiss Tropical and Public Health Institute, University of Basel
Verified email at unibas.ch - Homepage
Title
Cited by
Cited by
Year
Genetic variants of SARS-CoV-2—what do they mean?
AS Lauring, EB Hodcroft
Jama 325 (6), 529-531, 2021
7742021
Nextclade: clade assignment, mutation calling and quality control for viral genomes
I Aksamentov, C Roemer, EB Hodcroft, RA Neher
Journal of open source software 6 (67), 3773, 2021
7422021
COVID-19 epidemic in Switzerland: on the importance of testing, contact tracing and isolation
S Marcel, AL Christian, N Richard, S Silvia, H Emma, F Jacques, Z Marcel, ...
Swiss medical weekly 150, w202205, 2020
6282020
Spread of a SARS-CoV-2 variant through Europe in the summer of 2020
EB Hodcroft, M Zuber, S Nadeau, TG Vaughan, KHD Crawford, ...
Nature 595 (7869), 707-712, 2021
6242021
Coast-to-coast spread of SARS-CoV-2 during the early epidemic in the United States
JR Fauver, ME Petrone, EB Hodcroft, K Shioda, HY Ehrlich, AG Watts, ...
Cell 181 (5), 990-996. e5, 2020
3782020
Potential impact of seasonal forcing on a SARS-CoV-2 pandemic
D Robert
Swiss Medical Weekly, 2020
3752020
Automated analysis of phylogenetic clusters
M Ragonnet-Cronin, E Hodcroft, S Hué, E Fearnhill, V Delpech, ...
BMC bioinformatics 14, 1-10, 2013
3702013
Scientific consensus on the COVID-19 pandemic: we need to act now
NA Alwan, RA Burgess, S Ashworth, R Beale, N Bhadelia, D Bogaert, ...
The Lancet 396 (10260), e71-e72, 2020
3502020
CoVariants: SARS-CoV-2 Mutations and Variants of Interest
EB Hodcroft
www.covariants.org, 2021
319*2021
Cryptic transmission of SARS-CoV-2 in Washington state
T Bedford, AL Greninger, P Roychoudhury, LM Starita, M Famulare, ...
Science 370 (6516), 571-575, 2020
3122020
SARS-CoV-2 Variants of Interest and Concern naming scheme conducive for global discourse
F Konings, MD Perkins, JH Kuhn, MJ Pallen, EJ Alm, BN Archer, ...
Nature microbiology 6 (7), 821-823, 2021
2772021
Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020
E Alm, EK Broberg, T Connor, EB Hodcroft, AB Komissarov, ...
Eurosurveillance 25 (32), 2001410, 2020
2662020
Urgent need for a non-discriminatory and non-stigmatizing nomenclature for monkeypox virus
C Happi, I Adetifa, P Mbala, R Njouom, E Nakoune, A Happi, N Ndodo, ...
PLoS biology 20 (8), e3001769, 2022
2532022
Multiplex qPCR discriminates variants of concern to enhance global surveillance of SARS-CoV-2
CBF Vogels, MI Breban, IM Ott, T Alpert, ME Petrone, AE Watkins, ...
PLoS biology 19 (5), e3001236, 2021
252*2021
Public health actions to control new SARS-CoV-2 variants
ND Grubaugh, EB Hodcroft, JR Fauver, AL Phelan, M Cevik
Cell 184 (5), 1127-1132, 2021
1842021
The evolution and biology of SARS-CoV-2 variants
A Telenti, EB Hodcroft, DL Robertson
Cold Spring Harbor perspectives in medicine 12 (5), a041390, 2022
1742022
Augur: a bioinformatics toolkit for phylogenetic analyses of human pathogens
J Huddleston, J Hadfield, TR Sibley, J Lee, K Fay, M Ilcisin, E Harkins, ...
Journal of open source software 6 (57), 2021
1552021
Emergence in late 2020 of multiple lineages of SARS-CoV-2 Spike protein variants affecting amino acid position 677
EB Hodcroft, DB Domman, DJ Snyder, KY Oguntuyo, M Van Diest, ...
MedRxiv, 2021
1292021
Transmission of SARS-CoV-2 in domestic cats imposes a narrow bottleneck
KM Braun, GK Moreno, PJ Halfmann, EB Hodcroft, DA Baker, EC Boehm, ...
PLoS pathogens 17 (2), e1009373, 2021
1192021
Want to track pandemic variants faster? Fix the bioinformatics bottleneck
EB Hodcroft, N De Maio, R Lanfear, DR MacCannell, BQ Minh, ...
Nature 591 (7848), 30-33, 2021
1112021
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