| COVID-19 epidemic in Switzerland: on the importance of testing, contact tracing and isolation M Salathé, CL Althaus, R Neher, S Stringhini, E Hodcroft, J Fellay, ... Swiss medical weekly 150 (1112), 2020 | 260 | 2020 |
| Automated analysis of phylogenetic clusters M Ragonnet-Cronin, E Hodcroft, S Hué, E Fearnhill, V Delpech, ... BMC bioinformatics 14 (1), 1-10, 2013 | 209 | 2013 |
| Potential impact of seasonal forcing on a SARS-CoV-2 pandemic RA Neher, R Dyrdak, V Druelle, EB Hodcroft, J Albert Swiss medical weekly 150 (1112), 2020 | 185 | 2020 |
| Coast-to-coast spread of SARS-CoV-2 during the early epidemic in the United States JR Fauver, ME Petrone, EB Hodcroft, K Shioda, HY Ehrlich, AG Watts, ... Cell 181 (5), 990-996. e5, 2020 | 143 | 2020 |
| Cryptic transmission of SARS-CoV-2 in Washington state T Bedford, AL Greninger, P Roychoudhury, LM Starita, M Famulare, ... Science 370 (6516), 571-575, 2020 | 92 | 2020 |
| Scientific consensus on the COVID-19 pandemic: we need to act now NA Alwan, RA Burgess, S Ashworth, R Beale, N Bhadelia, D Bogaert, ... The Lancet 396 (10260), e71-e72, 2020 | 70 | 2020 |
| Phylogenetic tools for generalized HIV-1 epidemics: findings from the PANGEA-HIV methods comparison O Ratmann, EB Hodcroft, M Pickles, A Cori, M Hall, S Lycett, C Colijn, ... Molecular biology and evolution 34 (1), 185-203, 2017 | 52 | 2017 |
| Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020 E Alm, EK Broberg, T Connor, EB Hodcroft, AB Komissarov, ... Eurosurveillance 25 (32), 2001410, 2020 | 51 | 2020 |
| Identifying transmission clusters with cluster picker and HIV-TRACE R Rose, SL Lamers, JJ Dollar, MK Grabowski, EB Hodcroft, ... AIDS research and human retroviruses 33 (3), 211-218, 2017 | 50 | 2017 |
| Preliminary case report on the SARS-CoV-2 cluster in the UK, France, and Spain EB Hodcroft Preprints, 2020 | 46 | 2020 |
| The contribution of viral genotype to plasma viral set-point in HIV infection E Hodcroft, JD Hadfield, E Fearnhill, A Phillips, D Dunn, S O'Shea, ... PLoS Pathog 10 (5), e1004112, 2014 | 43 | 2014 |
| Transmission of non-B HIV subtypes in the United Kingdom is increasingly driven by large non-heterosexual transmission clusters M Ragonnet-Cronin, SJ Lycett, EB Hodcroft, S Hué, E Fearnhill, AE Brown, ... The Journal of infectious diseases 213 (9), 1410-1418, 2016 | 38 | 2016 |
| Emergence and spread of a SARS-CoV-2 variant through Europe in the summer of 2020 EB Hodcroft, M Zuber, S Nadeau, KHD Crawford, JD Bloom, D Veesler, ... MedRxiv, 2020 | 33 | 2020 |
| Non-disclosed men who have sex with men in UK HIV transmission networks: phylogenetic analysis of surveillance data M Ragonnet-Cronin, S Hué, EB Hodcroft, A Tostevin, D Dunn, T Fawcett, ... The lancet HIV 5 (6), e309-e316, 2018 | 27 | 2018 |
| Genetic Variants of SARS-CoV-2—What Do They Mean? AS Lauring, EB Hodcroft JAMA, 2021 | 22 | 2021 |
| Using nearly full-genome HIV sequence data improves phylogeny reconstruction in a simulated epidemic G Yebra, EB Hodcroft, ML Ragonnet-Cronin, D Pillay, AJL Brown, ... Scientific reports 6 (1), 1-6, 2016 | 22 | 2016 |
| Genomic analysis of nCoV spread T Bedford, R Neher, J Hadfield, E Hodcroft, M Ilcisin, N Müller Situation report 2020-01-30. 2020. https://nextstrain. org/narratives/ncov …, 2020 | 16* | 2020 |
| TreeCollapserCL 4 E Hodcroft URL http://emmahodcroft. com/TreeCollapseCL. html, 2013 | 15* | 2013 |
| Year-letter genetic clade naming for SARS-CoV-2 on Nextstain. org EB Hodcroft, J Hadfield, RA Neher, T Bedford Nextstrainorg. June 2, 2020 | 14 | 2020 |
| Comparing viral load and clinical outcomes in Washington State across D614G mutation in spike protein of SARS-CoV-2 C Wagner, P Roychoudhury, J Hadfield, E Hodcroft, J Lee, L Moncla, ... | 14 | 2020 |
Richard NeherBiozentrum, University of BaselVerified email at unibas.ch
