Emma B Hodcroft
Emma B Hodcroft
Post-doctoral Researcher, University of Basel
Verified email at unibas.ch - Homepage
Title
Cited by
Cited by
Year
Automated analysis of phylogenetic clusters
M Ragonnet-Cronin, E Hodcroft, S Hué, E Fearnhill, V Delpech, ...
BMC bioinformatics 14 (1), 317, 2013
1872013
COVID-19 epidemic in Switzerland: on the importance of testing, contact tracing and isolation.
M Salathé, CL Althaus, R Neher, S Stringhini, E Hodcroft, J Fellay, ...
Swiss medical weekly 150 (11-12), w20225-, 2020
1212020
Potential impact of seasonal forcing on a SARS-CoV-2 pandemic
RA Neher, R Dyrdak, V Druelle, EB Hodcroft, J Albert
Swiss medical weekly 150 (1112), 2020
872020
Phylogenetic tools for generalized HIV-1 epidemics: findings from the PANGEA-HIV methods comparison
O Ratmann, EB Hodcroft, M Pickles, A Cori, M Hall, S Lycett, C Colijn, ...
Molecular biology and evolution 34 (1), 185-203, 2017
432017
Identifying transmission clusters with cluster picker and HIV-TRACE
R Rose, SL Lamers, JJ Dollar, MK Grabowski, EB Hodcroft, ...
AIDS research and human retroviruses 33 (3), 211-218, 2017
422017
The contribution of viral genotype to plasma viral set-point in HIV infection
E Hodcroft, JD Hadfield, E Fearnhill, A Phillips, D Dunn, S O'Shea, ...
PLoS Pathog 10 (5), e1004112, 2014
392014
Coast-to-coast spread of SARS-CoV-2 during the early epidemic in the United States
JR Fauver, ME Petrone, EB Hodcroft, K Shioda, HY Ehrlich, AG Watts, ...
Cell, 2020
33*2020
Transmission of non-B HIV subtypes in the United Kingdom is increasingly driven by large non-heterosexual transmission clusters
M Ragonnet-Cronin, SJ Lycett, EB Hodcroft, S Hué, E Fearnhill, AE Brown, ...
The Journal of infectious diseases 213 (9), 1410-1418, 2016
322016
Preliminary case report on the SARS-CoV-2 cluster in the UK, France, and Spain
HB Emma
SWISS MEDICAL WEEKLY 150, 2020
22*2020
Using nearly full-genome HIV sequence data improves phylogeny reconstruction in a simulated epidemic
G Yebra, EB Hodcroft, ML Ragonnet-Cronin, D Pillay, AJL Brown, ...
Scientific reports 6, 39489, 2016
212016
Non-disclosed men who have sex with men in UK HIV transmission networks: phylogenetic analysis of surveillance data
M Ragonnet-Cronin, S Hué, EB Hodcroft, A Tostevin, D Dunn, T Fawcett, ...
The lancet HIV 5 (6), e309-e316, 2018
182018
Genomic analysis of nCoV spread
T Bedford, R Neher, J Hadfield, E Hodcroft, M Ilcisin, N Müller
Situation report 2020-01-30. 2020. https://nextstrain. org/narratives/ncov …, 2020
172020
TreeCollapserCL 4
E Hodcroft
URL http://emmahodcroft. com/TreeCollapseCL. html, 2013
14*2013
United Kingdom HIV drug resistance database. Transmission of non-B HIV subtypes in the United Kingdom is increasingly driven by large non-heterosexual transmission clusters
M Ragonnet-Cronin, SJ Lycett, EB Hodcroft, S Hué, E Fearnhill, AE Brown, ...
J Infect Dis 213 (9), 1410-1418, 2016
132016
Cryptic transmission of SARS-CoV-2 in Washington State
T Bedford, AL Greninger, P Roychoudhury, LM Starita, M Famulare, ...
medRxiv, 2020
122020
UK HIV Drug Resistance Database
M Ragonnet-Cronin, E Hodcroft, S Hué, E Fearnhill, V Delpech, ...
Automated analysis of phylogenetic clusters. BMC Bioinformatics 14, 317, 2013
92013
Intra- and interpatient evolution of enterovirus D68 analyzed by whole-genome deep sequencing
R Dyrdak, M Mastafa, EB Hodcroft, R Neher, J Albert
Virus Evolution 5 (1), vez007, 2019
62019
Comparing viral load and clinical outcomes in Washington State across D614G mutation in spike protein of SARS-CoV-2
C Wagner, P Roychoudhury, J Hadfield, EB Hodcroft, J Lee, LH Moncla, ...
6
Understanding disclosed and cryptic HIV transmission risk via genetic analysis: what are we missing and when does it matter?
M Ragonnet-Cronin, EB Hodcroft, JO Wertheim
Current Opinion in HIV and AIDS 14 (3), 205-212, 2019
52019
A direct comparison of two densely sampled HIV epidemics: the UK and Switzerland
ML Ragonnet-Cronin, M Shilaih, HF Günthard, EB Hodcroft, J Böni, ...
Scientific reports 6 (1), 1-9, 2016
52016
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