Francesco Asnicar
Title
Cited by
Cited by
Year
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
735*2019
Compact graphical representation of phylogenetic data and metadata with GraPhlAn
F Asnicar, G Weingart, TL Tickle, C Huttenhower, N Segata
PeerJ 3, e1029, 2015
285*2015
Extensive unexplored human microbiome diversity revealed by over 150,000 genomes from metagenomes spanning age, geography, and lifestyle
E Pasolli, F Asnicar, S Manara, M Zolfo, N Karcher, F Armanini, F Beghini, ...
Cell 176 (3), 649-662. e20, 2019
1982019
Strain-level microbial epidemiology and population genomics from shotgun metagenomics
M Scholz, DV Ward, E Pasolli, T Tolio, M Zolfo, F Asnicar, DT Truong, ...
Nature methods 13 (5), 435-438, 2016
1942016
Mother-to-infant microbial transmission from different body sites shapes the developing infant gut microbiome
P Ferretti, E Pasolli, A Tett, F Asnicar, V Gorfer, S Fedi, F Armanini, ...
Cell host & microbe 24 (1), 133-145. e5, 2018
1842018
Studying vertical microbiome transmission from mothers to infants by strain-level metagenomic profiling
F Asnicar, S Manara, M Zolfo, DT Truong, M Scholz, F Armanini, P Ferretti, ...
MSystems 2 (1), e00164-16, 2017
1012017
Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation
AM Thomas, P Manghi, F Asnicar, E Pasolli, F Armanini, M Zolfo, ...
Nature medicine 25 (4), 667-678, 2019
772019
Strain-level analysis of mother-to-child bacterial transmission during the first few months of life
M Yassour, E Jason, LJ Hogstrom, TD Arthur, S Tripathi, H Siljander, ...
Cell host & microbe 24 (1), 146-154. e4, 2018
752018
Unexplored diversity and strain-level structure of the skin microbiome associated with psoriasis
A Tett, E Pasolli, S Farina, DT Truong, F Asnicar, M Zolfo, F Beghini, ...
NPJ biofilms and microbiomes 3 (1), 1-12, 2017
652017
Uncovering oral Neisseria tropism and persistence using metagenomic sequencing
C Donati, M Zolfo, D Albanese, DT Truong, F Asnicar, V Iebba, D Cavalieri, ...
Nature microbiology 1 (7), 16070, 2016
292016
Enhanced microbial diversity in the saliva microbiome induced by short-term probiotic intake revealed by 16S rRNA sequencing on the IonTorrent PGM platform
E Dassi, A Ballarini, G Covello, A Quattrone, O Jousson, V De Sanctis, ...
Journal of biotechnology 190, 30-39, 2014
242014
Whole-genome epidemiology, characterisation, and phylogenetic reconstruction of Staphylococcus aureus strains in a paediatric hospital
S Manara, E Pasolli, D Dolce, N Ravenni, S Campana, F Armanini, ...
Genome medicine 10 (1), 1-19, 2018
192018
The Prevotella copri complex comprises four distinct clades underrepresented in Westernized populations
A Tett, KD Huang, F Asnicar, H Fehlner-Peach, E Pasolli, N Karcher, ...
Cell host & microbe 26 (5), 666-679. e7, 2019
172019
TN-grid and gene@ home project: volunteer computing for bioinformatics
F Asnicar, N Sella, L Masera, P Morettin, T Tolio, S Semeniuta, C Moser, ...
BOINC: FAST 2015 International Conference BOINC: FAST 2015Second …, 2015
112015
Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea
Q Zhu, U Mai, W Pfeiffer, S Janssen, F Asnicar, JG Sanders, ...
Nature communications 10 (1), 1-14, 2019
102019
NES2RA: Network expansion by stratified variable subsetting and ranking aggregation
F Asnicar, L Masera, E Coller, C Gallo, N Sella, T Tolio, P Morettin, ...
The International Journal of High Performance Computing Applications 32 (3 …, 2018
92018
Profiling microbial strains in urban environments using metagenomic sequencing data
M Zolfo, F Asnicar, P Manghi, E Pasolli, A Tett, N Segata
Biology direct 13 (1), 9, 2018
72018
Discovering candidates for gene network expansion by distributed volunteer computing
F Asnicar, L Erculiani, F Galante, C Gallo, L Masera, P Morettin, N Sella, ...
2015 IEEE Trustcom/BigDataSE/ISPA 3, 248-253, 2015
72015
Genomic and metagenomic insights into the microbial community of a thermal spring
R Pedron, A Esposito, I Bianconi, E Pasolli, A Tett, F Asnicar, ...
Microbiome 7 (1), 8, 2019
62019
Discovering causal relationships in grapevine expression data to expand gene networks. a case study: four networks related to climate change
G Malacarne, S Pilati, S Valentini, F Asnicar, M Moretto, P Sonego, ...
Frontiers in plant science 9, 1385, 2018
62018
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Articles 1–20