Tommy Kaplan
Tommy Kaplan
Professor of Computer Science and Computational Biology, The Hebrew University
Verified email at cs.huji.ac.il - Homepage
TitleCited byYear
Single-nucleosome mapping of histone modifications in S. cerevisiae
CL Liu, T Kaplan, M Kim, S Buratowski, SL Schreiber, N Friedman, ...
PLoS biology 3 (10), e328, 2005
5282005
Dynamics of replication-independent histone turnover in budding yeast
MF Dion, T Kaplan, M Kim, S Buratowski, N Friedman, OJ Rando
Science 315 (5817), 1405, 2007
5102007
Modeling dependencies in protein-DNA binding sites
Y Barash, G Elidan, N Friedman, T Kaplan
Proceedings of the seventh annual international conference on Research in …, 2003
2832003
Ab initio construction of a eukaryotic transcriptome by massively parallel mRNA sequencing
M Yassour, T Kaplan, HB Fraser, JZ Levin, J Pfiffner, X Adiconis, ...
Proceedings of the National Academy of Sciences 106 (9), 3264-3269, 2009
2222009
Zelda binding in the early Drosophila melanogaster embryo marks regions subsequently activated at the maternal-to-zygotic transition
MM Harrison, XY Li, T Kaplan, MR Botchan, MB Eisen
PLoS genetics 7 (10), e1002266, 2011
2192011
Large-scale discovery of enhancers from human heart tissue
D May, MJ Blow, T Kaplan, DJ McCulley, BC Jensen, JA Akiyama, A Holt, ...
Nature genetics 44 (1), 89, 2012
2092012
Structure and function of a transcriptional network activated by the MAPK Hog1
AP Capaldi, T Kaplan, Y Liu, N Habib, A Regev, N Friedman, EK O'Shea
Nature genetics 40 (11), 1300, 2008
1932008
Quantitative models of the mechanisms that control genome-wide patterns of transcription factor binding during early Drosophila development
T Kaplan, XY Li, PJ Sabo, S Thomas, JA Stamatoyannopoulos, MD Biggin, ...
PLoS genetics 7 (2), e1001290, 2011
1742011
A high-resolution enhancer atlas of the developing telencephalon
A Visel, L Taher, H Girgis, D May, O Golonzhka, RV Hoch, GL McKinsey, ...
Cell 152 (4), 895-908, 2013
1602013
Cell cycle–and chaperone-mediated regulation of H3K56ac incorporation in yeast
T Kaplan, CL Liu, JA Erkmann, J Holik, M Grunstein, PD Kaufman, ...
PLoS genetics 4 (11), e1000270, 2008
1302008
Ab initio prediction of transcription factor targets using structural knowledge
T Kaplan, N Friedman, H Margalit
PLoS computational biology 1 (1), e1, 2005
1292005
Establishment of regions of genomic activity during the Drosophila maternal to zygotic transition
XY Li, MM Harrison, JE Villalta, T Kaplan, MB Eisen
Elife 3, e03737, 2014
942014
Roles for H2A. Z and its acetylation in GAL1 transcription and gene induction, but not GAL1-transcriptional memory
JE Halley, T Kaplan, AY Wang, MS Kobor, J Rine
PLoS biology 8 (6), e1000401, 2010
802010
Extensive divergence of transcription factor binding in Drosophila embryos with highly conserved gene expression
M Paris, T Kaplan, XY Li, JE Villalta, SE Lott, MB Eisen
PLoS genetics 9 (9), e1003748, 2013
792013
Zelda is differentially required for chromatin accessibility, transcription factor binding, and gene expression in the early Drosophila embryo
KN Schulz, ER Bondra, A Moshe, JE Villalta, JD Lieb, T Kaplan, ...
Genome research 25 (11), 1715-1726, 2015
732015
High throughput determination of TGFβ1/SMAD3 targets in A549 lung epithelial cells
Y Zhang, D Handley, T Kaplan, H Yu, AS Bais, T Richards, KV Pandit, ...
PLoS One 6 (5), e20319, 2011
562011
Evaluation of PSI-BLAST alignment accuracy in comparison to structural alignments
I Friedberg, T Kaplan, H Margalit
Protein Science 9 (11), 2278-2284, 2000
502000
Taf7l cooperates with Trf2 to regulate spermiogenesis
H Zhou, I Grubisic, K Zheng, Y He, PJ Wang, T Kaplan, R Tjian
Proceedings of the National Academy of Sciences 110 (42), 16886-16891, 2013
492013
A novel Bayesian DNA motif comparison method for clustering and retrieval
N Habib, T Kaplan, H Margalit, N Friedman
PLoS computational biology 4 (2), e1000010, 2008
492008
Dual functions of TAF7L in adipocyte differentiation
H Zhou, T Kaplan, Y Li, I Grubisic, Z Zhang, PJ Wang, MB Eisen, R Tjian
Elife 2, e00170, 2013
352013
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