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Benjamin Hillmann
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Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
129642019
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ...
PeerJ Preprints, 2018
9202018
US immigration westernizes the human gut microbiome
P Vangay, AJ Johnson, TL Ward, GA Al-Ghalith, RR Shields-Cutler, ...
Cell 175 (4), 962-972. e10, 2018
6052018
Daily sampling reveals personalized diet-microbiome associations in humans
AJ Johnson, P Vangay, GA Al-Ghalith, BM Hillmann, TL Ward, ...
Cell host & microbe 25 (6), 789-802. e5, 2019
4862019
Captivity humanizes the primate microbiome
JB Clayton, P Vangay, HU Huang, T Ward, BM Hillmann, GA Al-Ghalith, ...
Proceedings of the National Academy of Sciences 113 (37), 10376-10381, 2016
4552016
Stable engraftment of Bifidobacterium longum AH1206 in the human gut depends on individualized features of the resident microbiome
MX Maldonado-Gómez, I Martínez, F Bottacini, A O’Callaghan, M Ventura, ...
Cell host & microbe 20 (4), 515-526, 2016
3992016
Evaluating the information content of shallow shotgun metagenomics
B Hillmann, GA Al-Ghalith, RR Shields-Cutler, Q Zhu, DM Gohl, ...
Msystems 3 (6), 10.1128/msystems. 00069-18, 2018
2922018
Fecal microbiota transplantation reverses antibiotic and chemotherapy-induced gut dysbiosis in mice
Q Le Bastard, T Ward, D Sidiropoulos, BM Hillmann, CL Chun, ...
Scientific reports 8 (1), 6219, 2018
1212018
Personalized Microbiome Class Students; et al. Daily sampling reveals personalized diet-microbiome associations in humans
AJ Johnson, P Vangay, GA Al-Ghalith, BM Hillmann, TL Ward, ...
Cell Host Microbe 25 (6), 789-802, 2019
762019
An increased abundance of Clostridiaceae characterizes arthritis in inflammatory bowel disease and rheumatoid arthritis: a cross-sectional study
DA Muñiz Pedrogo, J Chen, B Hillmann, P Jeraldo, G Al-Ghalith, V Taneja, ...
Inflammatory bowel diseases 25 (5), 902-913, 2019
762019
Microbiome Learning Repo (ML Repo): A public repository of microbiome regression and classification tasks
P Vangay, BM Hillmann, D Knights
Gigascience 8 (5), giz042, 2019
742019
Turkers, scholars," arafat" and" peace" cultural communities and algorithmic gold standards
S Sen, ME Giesel, R Gold, B Hillmann, M Lesicko, S Naden, J Russell, ...
Proceedings of the 18th acm conference on computer supported cooperative …, 2015
692015
SHI7 is a self-learning pipeline for multipurpose short-read DNA quality control
GA Al-Ghalith, B Hillmann, K Ang, R Shields-Cutler, D Knights
Msystems 3 (3), 10.1128/msystems. 00202-17, 2018
612018
SHOGUN: a modular, accurate and scalable framework for microbiome quantification
B Hillmann, GA Al-Ghalith, RR Shields-Cutler, Q Zhu, R Knight, D Knights
Bioinformatics 36 (13), 4088-4090, 2020
412020
Wikibrain: democratizing computation on wikipedia
S Sen, TJJ Li, WB Team, B Hecht
Proceedings of The International Symposium on Open Collaboration, 1-10, 2014
322014
Personalized Microbiome Class Students, Walter J, Menon R, Koecher K, Knights D. 2019. Daily sampling reveals personalized diet-microbiome associations in humans
AJ Johnson, P Vangay, GA Al-Ghalith, BM Hillmann, TL Ward, ...
Cell Host Microbe 25 (6), 789-802, 0
32
QIIME 2: reproducible, interactive, scalable, and extensible microbiome data science. PeerJ Preprints 6: e27295v2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ...
262018
Gut microbiome signatures of nursing home residents carrying Enterobacteria Producing Extended-spectrum β-lactamases
Q LE BASTARD, G Chapelet, G Birgand, BM Hillmann, F Javaudin, ...
182020
Saliva testing is accurate for early-stage and presymptomatic COVID-19
AJ Johnson, S Zhou, SL Hoops, B Hillmann, M Schomaker, R Kincaid, ...
Microbiology spectrum 9 (1), 10.1128/spectrum. 00086-21, 2021
172021
CLOUD: a non-parametric detection test for microbiome outliers
E Montassier, GA Al-Ghalith, B Hillmann, K Viskocil, AJ Kabage, ...
Microbiome 6, 1-10, 2018
172018
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