| Genomic features of response to combination immunotherapy in patients with advanced non-small-cell lung cancer MD Hellmann, T Nathanson, H Rizvi, BC Creelan, F Sanchez-Vega, ... Cancer cell 33 (5), 843-852. e4, 2018 | 959 | 2018 |
| MHCflurry: open-source class I MHC binding affinity prediction TJ O'Donnell, A Rubinsteyn, M Bonsack, AB Riemer, U Laserson, ... Cell systems 7 (1), 129-132. e4, 2018 | 391 | 2018 |
| Contribution of systemic and somatic factors to clinical response and resistance to PD-L1 blockade in urothelial cancer: an exploratory multi-omic analysis A Snyder, T Nathanson, SA Funt, A Ahuja, J Buros Novik, MD Hellmann, ... PLoS medicine 14 (5), e1002309, 2017 | 300 | 2017 |
| Beautiful data: the stories behind elegant data solutions T Segaran, J Hammerbacher " O'Reilly Media, Inc.", 2009 | 264 | 2009 |
| Defining HLA-II Ligand Processing and Binding Rules with Mass Spectrometry Enhances Cancer Epitope Prediction JG Abelin, D Harjanto, M Malloy, P Suri, T Colson, SP Goulding, ... Immunity 51 (4), 766-779. e17, 2019 | 205 | 2019 |
| T cells genetically engineered to overcome death signaling enhance adoptive cancer immunotherapy TN Yamamoto, PH Lee, SK Vodnala, D Gurusamy, RJ Kishton, Z Yu, ... The Journal of clinical investigation 129 (4), 1551-1565, 2019 | 145 | 2019 |
| Somatic Mutations and Neoepitope Homology in Melanomas Treated with CTLA-4 Blockade T Nathanson, A Ahuja, A Rubinsteyn, BA Aksoy, MD Hellmann, D Miao, ... Cancer Immunology Research 5 (1), 84-91, 2017 | 145 | 2017 |
| Coral: Clear and customizable visualization of human kinome data KS Metz, EM Deoudes, ME Berginski, I Jimenez-Ruiz, BA Aksoy, ... Cell systems 7 (3), 347-350. e1, 2018 | 140 | 2018 |
| Rethinking data-intensive science using scalable analytics systems FA Nothaft, M Massie, T Danford, Z Zhang, U Laserson, C Yeksigian, ... Proceedings of the 2015 ACM SIGMOD International Conference on Management of …, 2015 | 126 | 2015 |
| Using a machine learning approach to predict outcomes after radiosurgery for cerebral arteriovenous malformations EK Oermann, A Rubinsteyn, D Ding, J Mascitelli, RM Starke, JB Bederson, ... Scientific reports 6 (1), 1-12, 2016 | 109 | 2016 |
| Joint longitudinal and time-to-event models for multilevel hierarchical data SL Brilleman, MJ Crowther, M Moreno-Betancur, J Buros Novik, J Dunyak, ... Statistical methods in medical research 28 (12), 3502-3515, 2019 | 80 | 2019 |
| PI3Kδ inhibition enhances the antitumor fitness of adoptively transferred CD8+ T cells JS Bowers, K Majchrzak, M Nelson, BA Aksoy, MM Wyatt, AS Smith, ... Frontiers in Immunology 8, 1221, 2017 | 79 | 2017 |
| Anti–CTLA-4 Activates Intratumoral NK Cells and Combined with IL15/IL15Rα Complexes Enhances Tumor Control E Sanseviero, EM O’Brien, JR Karras, TB Shabaneh, BA Aksoy, W Xu, ... Cancer immunology research 7 (8), 1371-1380, 2019 | 63 | 2019 |
| Computational pipeline for the PGV-001 neoantigen vaccine trial A Rubinsteyn, J Kodysh, I Hodes, S Mondet, BA Aksoy, JP Finnigan, ... Frontiers in immunology 8, 1807, 2018 | 61 | 2018 |
| Cytokit: A single-cell analysis toolkit for high dimensional fluorescent microscopy imaging E Czech, BA Aksoy, P Aksoy, J Hammerbacher BMC bioinformatics 20 (1), 1-13, 2019 | 55 | 2019 |
| Chemotherapy weakly contributes to predicted neoantigen expression in ovarian cancer T O’Donnell, EL Christie, A Ahuja, J Buros, BA Aksoy, DDL Bowtell, ... BMC cancer 18 (1), 1-11, 2018 | 42 | 2018 |
| Information platforms and the rise of the data scientist J Hammerbacher, T Segaran Beautiful data: the stories behind elegant data solutions, 73-84, 2009 | 42 | 2009 |
| How will big data improve clinical and basic research in radiation therapy? BS Rosenstein, J Capala, JA Efstathiou, J Hammerbacher, SL Kerns, ... International Journal of Radiation Oncology* Biology* Physics 95 (3), 895-904, 2016 | 35 | 2016 |
| Mutations in an Innate Immunity Pathway Are Associated with Poor Overall Survival Outcomes and Hypoxic Signaling in Cancer MM Olcina, NG Balanis, RK Kim, BA Aksoy, J Kodysh, MJ Thompson, ... Cell Reports 25 (13), 3721-3732. e6, 2018 | 27 | 2018 |
| pileup. js: a JavaScript library for interactive and in-browser visualization of genomic data D Vanderkam, BA Aksoy, I Hodes, J Perrone, J Hammerbacher Bioinformatics 32 (15), 2378-2379, 2016 | 26 | 2016 |
Bulent Arman AksoyObsidian TherapeuticsVerified email at aksoy.org
