James Bonfield
James Bonfield
Verified email at sanger.ac.uk
TitleCited byYear
Finishing the euchromatic sequence of the human genome
International Human Genome Sequencing Consortium
Nature 431 (7011), 931, 2004
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
International Chicken Genome Sequencing Consortium
Nature 432 (7018), 695, 2004
2.2 Mb of contiguous nucleotide sequence from chromosome III of C. elegans
R Wilson, R Ainscough, K Anderson, C Baynes, M Berks, J Bonfield, ...
Nature 368 (6466), 32, 1994
The staden package, 1998
R Staden, KF Beal, JK Bonfield
Bioinformatics methods and protocols, 115-130, 2000
A new DNA sequence assembly program
JK Bonfield, KF Smith, R Staden
Nucleic acids research 23 (24), 4992-4999, 1995
Analyzing sequences using the Staden package and EMBOSS
R Staden, DP Judge, JK Bonfield
Introduction to bioinformatics, 393-410, 2003
Compression of FASTQ and SAM format sequencing data
JK Bonfield, MV Mahoney
PloS one 8 (3), e59190, 2013
Gap5—editing the billion fragment sequence assembly
JK Bonfield, A Whitwham
Bioinformatics 26 (14), 1699-1703, 2010
A genome-wide, end-sequenced 129Sv BAC library resource for targeting vector construction
DJ Adams, MA Quail, T Cox, L Van Der Weyden, BD Gorick, Q Su, ...
Genomics 86 (6), 753-758, 2005
Petabyte-scale innovations at the European Nucleotide Archive
G Cochrane, R Akhtar, J Bonfield, L Bower, F Demiralp, N Faruque, ...
Nucleic acids research 37 (suppl_1), D19-D25, 2008
Automated detection of point mutations using fluorescent sequence trace subtraction
JK Bonfield, C Rada, R Staden
Nucleic acids research 26 (14), 3404-3409, 1998
Experiment files and their application during large-scale sequencing projects
JK Bonfield, R Staden
DNA sequence 6 (2), 109-117, 1996
Transcriptome analysis for the chicken based on 19,626 finished cDNA sequences and 485,337 expressed sequence tags
SJ Hubbard, DV Grafham, KJ Beattie, IM Overton, SR McLaren, ...
Genome research 15 (1), 174-183, 2005
Sequence assembly and finishing methods
R Staden, DP Judge, JK Bonfield
Bioinformatics A Practical Guide to the Analysis of Genes and Proteins, 302-322, 2001
Priorities for nucleotide trace, sequence and annotation data capture at the Ensembl Trace Archive and the EMBL Nucleotide Sequence Database
G Cochrane, R Akhtar, P Aldebert, N Althorpe, A Baldwin, K Bates, ...
Nucleic Acids Research 36 (suppl_1), D5-D12, 2007
Genome sequence of the nematode C. elegans: a platform for investigating biology
R Ainscough, S Bardill, K Barlow, V Basham, C Baynes, L Beard, ...
Science 282 (5396), 2012-2018, 1998
Complex haplotypes, copy number polymorphisms and coding variation in two recently divergent mouse strains
DJ Adams, ET Dermitzakis, T Cox, J Smith, R Davies, R Banerjee, ...
Nature genetics 37 (5), 532, 2005
Comparison of high-throughput sequencing data compression tools
I Numanagić, JK Bonfield, F Hach, J Voges, J Ostermann, C Alberti, ...
nature methods 13 (12), 1005, 2016
The application of numerical estimates of base calling accuracy to DNA sequencing projects
JK Bonfield, R Staden
Nucleic acids research 23 (8), 1406-1410, 1995
De novo yeast genome assemblies from MinION, PacBio and MiSeq platforms
F Giordano, L Aigrain, MA Quail, P Coupland, JK Bonfield, RM Davies, ...
Scientific reports 7 (1), 3935, 2017
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