Joe Parker
Joe Parker
Research Fellow - National Biofilms Innovation Centre, Southampton
Verified email at kitson-consulting.co.uk - Homepage
Title
Cited by
Cited by
Year
Correlating viral phenotypes with phylogeny: accounting for phylogenetic uncertainty
J Parker, A Rambaut, OG Pybus
Infection, Genetics and Evolution 8 (3), 239-246, 2008
3832008
Genome-wide signatures of convergent evolution in echolocating mammals
J Parker, G Tsagkogeorga, JA Cotton, Y Liu, P Provero, E Stupka, ...
Nature 502 (7470), 228-231, 2013
3282013
The mode and tempo of hepatitis C virus evolution within and among hosts
RR Gray, J Parker, P Lemey, M Salemi, A Katzourakis, OG Pybus
BMC evolutionary biology 11 (1), 1-10, 2011
1352011
Diffusion tensor MR imaging reveals persistent white matter alteration after traumatic brain injury experienced during early childhood
W Yuan, SK Holland, VJ Schmithorst, NC Walz, KM Cecil, BV Jones, ...
American Journal of Neuroradiology 28 (10), 1919-1925, 2007
1172007
Phylogenomic analyses elucidate the evolutionary relationships of bats
G Tsagkogeorga, J Parker, E Stupka, JA Cotton, SJ Rossiter
Current Biology 23 (22), 2262-2267, 2013
1162013
Field-based species identification of closely-related plants using real-time nanopore sequencing
J Parker, AJ Helmstetter, D Devey, T Wilkinson, AST Papadopulos
Scientific reports 7 (1), 1-8, 2017
542017
Evolutionary and phylogenetic analysis of the hepaciviruses and pegiviruses
J Thézé, S Lowes, J Parker, OG Pybus
Genome Biology and Evolution 7 (11), 2996-3008, 2015
492015
Molecular epidemiology and phylogeny reveals complex spatial dynamics of endemic canine parvovirus
SR Clegg, KP Coyne, J Parker, S Dawson, SA Godsall, G Pinchbeck, ...
Journal of virology, JVI. 01576-10v1, 2011
49*2011
Full-length characterization of hepatitis C virus subtype 3a reveals novel hypervariable regions under positive selection during acute infection
I Humphreys, V Fleming, P Fabris, J Parker, B Schulenberg, A Brown, ...
Journal of virology 83 (22), 11456-11466, 2009
342009
Safety and immunogenicity of novel recombinant BCG and modified vaccinia virus Ankara vaccines in neonate rhesus macaques
M Rosario, J Fulkerson, S Soneji, J Parker, EJ Im, N Borthwick, ...
Journal of virology 84 (15), 7815-7821, 2010
332010
Estimating the date of origin of an HIV-1 circulating recombinant form
KK Tee, OG Pybus, J Parker, KP Ng, A Kamarulzaman, Y Takebe
Virology 387 (1), 229-234, 2009
322009
Generation of neutralizing antibodies and divergence of SIVmac239 in cynomolgus macaques following short-term early antiretroviral therapy
G Özkaya Şahin, EJ Bowles, J Parker, H Uchtenhagen, E Sheik-Khalil, ...
PLoS pathogens 6 (9), e1001084, 2010
142010
Selected HIV-1 Env trimeric formulations act as potent immunogens in a rabbit vaccination model
L Heyndrickx, G Stewart-Jones, M Jansson, H Schuitemaker, E Bowles, ...
PloS one 8 (9), e74552, 2013
132013
Speciation processes in putative island endemic sister bat species: false impressions from mitochondrial DNA and microsatellite data
HC Kuo, SF Chen, YP Fang, JA Cotton, JD Parker, G Csorba, BK Lim, ...
Molecular Ecology 24 (23), 5910-5926, 2015
122015
A framework for predicting soft-fruit yields and phenology using embedded, networked microsensors, coupled weather models and machine-learning techniques
MA Lee, A Monteiro, A Barclay, J Marcar, M Miteva-Neagu, J Parker
Computers and Electronics in Agriculture 168, 105103, 2020
62020
Diagnostic accuracy of loop-mediated isothermal amplification coupled to nanopore sequencing (LamPORE) for the detection of SARS-CoV-2 infection at scale in symptomatic and …
A Ptasinska, C Whalley, A Bosworth, C Poxon, C Bryer, N Machin, ...
Clinical Microbiology and Infection, 2021
42021
Rapid, raw-read reference and identification (R4IDs): A flexible platform for rapid generic species ID using long-read sequencing technology
J Parker, A Helmstetter, J Crowe, J Iacona, D Devey, AST Papadopulos
bioRxiv, 281048, 2018
22018
Rapid Parallel Adaptation to Anthropogenic Heavy Metal Pollution
AST Papadopulos, AJ Helmstetter, O Osborne, A Comeault, D Wood, ...
Molecular Biology and Evolution, 2021
12021
Lightweight bioinformatics: evaluating the utility of Single Board Computer (SBC) clusters for portable, scalable Real-Time Bioinformatics in fieldwork environments via …
J Parker
bioRxiv, 337212, 2018
12018
Field-based species identification in eukaryotes using single molecule, real-time sequencing
J Parker, AJ Helmstetter, D Devey, AST Papadopulos
BioRxiv, 107656, 2017
12017
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Articles 1–20