Andrzej Rzepiela
Andrzej Rzepiela
Scientist, ETH
Verified email at ethz.ch
Title
Cited by
Cited by
Year
Martini coarse-grained force field: extension to carbohydrates
CA López, AJ Rzepiela, AH De Vries, L Dijkhuizen, PH Hünenberger, ...
Journal of Chemical Theory and Computation 5 (12), 3195-3210, 2009
3162009
Lipid packing drives the segregation of transmembrane helices into disordered lipid domains in model membranes
LV Schäfer, DH de Jong, A Holt, AJ Rzepiela, AH de Vries, B Poolman, ...
Proceedings of the National Academy of Sciences 108 (4), 1343-1348, 2011
2262011
Reconstruction of atomistic details from coarse‐grained structures
AJ Rzepiela, LV Schäfer, N Goga, HJ Risselada, AH De Vries, SJ Marrink
Journal of computational chemistry 31 (6), 1333-1343, 2010
1702010
Hybrid simulations: combining atomistic and coarse-grained force fields using virtual sites
AJ Rzepiela, M Louhivuori, C Peter, SJ Marrink
Physical Chemistry Chemical Physics 13 (22), 10437-10448, 2011
1502011
Membrane poration by antimicrobial peptides combining atomistic and coarse-grained descriptions
AJ Rzepiela, D Sengupta, N Goga, SJ Marrink
Faraday discussions 144, 431-443, 2010
1292010
Efficient Algorithms for Langevin and DPD Dynamics
N Goga, AJ Rzepiela, AH de Vries, SJ Marrink, HJC Berendsen
J. Chem. Theory Comput, 2012
1262012
VEGF-A regulates cellular localization of SR-BI as well as transendothelial transport of HDL but not LDL
S Velagapudi, M Yalcinkaya, A Piemontese, R Meier, SF Nřrrelykke, ...
Arteriosclerosis, thrombosis, and vascular biology 37 (5), 794-803, 2017
282017
Benchmark of schemes for multiscale molecular dynamics simulations
N Goga, MN Melo, AJ Rzepiela, AH De Vries, A Hadar, SJ Marrink, ...
Journal of chemical theory and computation 11 (4), 1389-1398, 2015
212015
Quantifying the strength of miRNA–target interactions
J Breda, AJ Rzepiela, R Gumienny, E van Nimwegen, M Zavolan
Methods 85, 90-99, 2015
192015
Bidirectional propagation of signals and nutrients in fungal networks via specialized hyphae
SS Schmieder, CE Stanley, A Rzepiela, D van Swaay, J Sabotič, ...
Current Biology 29 (2), 217-228. e4, 2019
142019
Single‐cell mRNA profiling reveals the hierarchical response of mi RNA targets to mi RNA induction
AJ Rzepiela, S Ghosh, J Breda, A Vina‐Vilaseca, AP Syed, AJ Gruber, ...
Molecular systems biology 14 (8), e8266, 2018
102018
High-resolution cryoelectron microscopy structure of the cyclic nucleotide-modulated potassium channel MloK1 in a lipid bilayer
J Kowal, N Biyani, M Chami, S Scherer, AJ Rzepiela, P Baumgartner, ...
Structure 26 (1), 20-27. e3, 2018
102018
Data driven Langevin modeling of biomolecular dynamics
N Schaudinnus, AJ Rzepiela, R Hegger, G Stock
The Journal of Chemical Physics 138 (20), 05B620_1, 2013
92013
Microsecond peptide dynamics from nanosecond trajectories: A Langevin approach
AJ Rzepiela, N Schaudinnus, S Buchenberg, R Hegger, G Stock
J. Chem. Phys. 141, 2014
62014
Methods for multiscale modeling of membranes
N Goga, A Rzepiela, MN Melo, AH de Vries, A Hadar, AJ Markvoort, ...
Advances in planar lipid bilayers and liposomes 15, 139-170, 2012
62012
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C Steffen, K Thomas, U Huniar, A Hellweg, O Rubner, A Schroer, ...
J. Comput. Chem 31 (16), 2967-2970, 2010
32010
Exploiting variability of single cells to uncover the in vivo hierarchy of miRNA targets
AJ Rzepiela, A Vina-Vilaseca, J Breda, S Ghosh, AP Syed, AJ Gruber, ...
bioRxiv, 035097, 2015
12015
Loss of TSC complex enhances gluconeogenesis via upregulation of Dlk1-Dio3 locus miRNAs
MNH Dritan Liko, Andrzej Rzepiela, Vanja Vukojevic, Mihaela Zavolan
Proceedings of the National Academy of Sciences, 2020
2020
Development of multiscale simulation methods
A Rzepiela
University of Groningen, 2011
2011
distribute. Destroy after use.
A Piemontese, R Meier, S Nřrrelykke, D Perisa, A Rzepiela, M Stebler, ...
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Articles 1–20