PJ Schaap
PJ Schaap
Associate professor, Systems and Synthetic Biology, Wageningen University, The Netherlands
Verified email at wur.nl
TitleCited byYear
Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88
HJ Pel, JH De Winde, DB Archer, PS Dyer, G Hofmann, PJ Schaap, ...
Nature biotechnology 25 (2), 221, 2007
10092007
Comparative genomics of citric-acid-producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88
MR Andersen, MP Salazar, PJ Schaap, PJI Van De Vondervoort, D Culley, ...
Genome research 21 (6), 885-897, 2011
2672011
Structure and activity of the RNA-targeting Type III-B CRISPR-Cas complex of Thermus thermophilus
RHJ Staals, Y Agari, S Maki-Yonekura, Y Zhu, DW Taylor, E Van Duijn, ...
Molecular cell 52 (1), 135-145, 2013
1792013
RNA targeting by the type III-A CRISPR-Cas Csm complex of Thermus thermophilus
RHJ Staals, Y Zhu, DW Taylor, JE Kornfeld, K Sharma, A Barendregt, ...
Molecular cell 56 (4), 518-530, 2014
1732014
3DM: systematic analysis of heterogeneous superfamily data to discover protein functionalities
RK Kuipers, HJ Joosten, WJH van Berkel, NGH Leferink, E Rooijen, ...
Proteins: Structure, Function, and Bioinformatics 78 (9), 2101-2113, 2010
1152010
TheAgaricus bisporus hypAgene encodes a hydrophobin and specifically accumulates in peel tissue of mushroom caps during fruit body development
PWJ De Groot, PJ Schaap, ASM Sonnenberg, J Visser, ...
Journal of molecular biology 257 (5), 1008-1018, 1996
1021996
Assessment of the pectin degrading enzyme network of Aspergillus niger by functional genomics
ES Martens-Uzunova, PJ Schaap
Fungal Genetics and Biology 46 (1), S170-S179, 2009
1002009
An iterative workflow for mining the human intestinal metaproteome
K Rooijers, C Kolmeder, C Juste, J Doré, M De Been, S Boeren, P Galan, ...
BMC genomics 12 (1), 6, 2011
962011
A comprehensive metatranscriptome analysis pipeline and its validation using human small intestine microbiota datasets
MM Leimena, J Ramiro-Garcia, M Davids, B van den Bogert, H Smidt, ...
BMC genomics 14 (1), 530, 2013
892013
An inventory of the Aspergillus niger secretome by combining in silico predictions with shotgun proteomics data
M Braaksma, ES Martens-Uzunova, PJ Punt, PJ Schaap
BMC genomics 11 (1), 584, 2010
812010
Identification of a gatekeeper residue that prevents dehydrogenases from acting as oxidases
NGH Leferink, MW Fraaije, HJ Joosten, PJ Schaap, A Mattevi, ...
Journal of Biological Chemistry 284 (7), 4392-4397, 2009
802009
Oxaloacetate hydrolase, the C–C bond lyase of oxalate secreting fungi
Y Han, HJ Joosten, W Niu, Z Zhao, PS Mariano, M McCalman, J Van Kan, ...
Journal of Biological Chemistry 282 (13), 9581-9590, 2007
792007
Identification and functional analysis of the nuclear localization signals of ribosomal protein L25 from Saccharomyces cerevisiae
PJ Schaap, J van't Riet, CL Woldringh, HA Raué
Journal of molecular biology 221 (1), 225-237, 1991
741991
A new group of exo-acting family 28 glycoside hydrolases of Aspergillus niger that are involved in pectin degradation
ES Martens-Uzunova, JS Zandleven, JAE Benen, H Awad, HJ Kools, ...
Biochemical Journal 400 (1), 43-52, 2006
692006
Correlated mutation analyses on super‐family alignments reveal functionally important residues
RKP Kuipers, HJ Joosten, E Verwiel, S Paans, J Akerboom, ...
Proteins: Structure, Function, and Bioinformatics 76 (3), 608-616, 2009
682009
Induction of glucose oxidase, catalase, and lactonase in Aspergillus niger
CFB Witteveen, PJI van de Vondervoort, HC van den Broeck, ...
Current genetics 24 (5), 408-416, 1993
651993
Characterization of the kexin-like maturase ofAspergillus niger
R Jalving, PJI van de Vondervoort, J Visser, PJ Schaap
Appl. Environ. Microbiol. 66 (1), 363-368, 2000
642000
Isolation of developmentally regulated genes from the edible mushroom Agaricus bisporus
PWJ De Groot, PJ Schaap, LJLD Van Griensven, J Visser
Microbiology 143 (6), 1993-2001, 1997
641997
NG-Tax, a highly accurate and validated pipeline for analysis of 16S rRNA amplicons from complex biomes
J Ramiro-Garcia, GDA Hermes, C Giatsis, D Sipkema, EG Zoetendal, ...
F1000Research 5, 2016
602016
Genome-scale metabolic model for Lactococcus lactis MG1363 and its application to the analysis of flavor formation
NAL Flahaut, A Wiersma, B van de Bunt, DE Martens, PJ Schaap, ...
Applied microbiology and biotechnology 97 (19), 8729-8739, 2013
602013
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