PJ Schaap
PJ Schaap
Associate professor, Systems and Synthetic Biology, Wageningen University, The Netherlands
Verified email at wur.nl
Title
Cited by
Cited by
Year
Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88
HJ Pel, JH de Winde, DB Archer, PS Dyer, G Hofmann, PJ Schaap, ...
Nature biotechnology 25 (2), 221-231, 2007
11762007
Comparative genomics of citric-acid-producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88
MR Andersen, MP Salazar, PJ Schaap, PJI van de Vondervoort, D Culley, ...
Genome research 21 (6), 885-897, 2011
3432011
RNA targeting by the type III-A CRISPR-Cas Csm complex of Thermus thermophilus
RHJ Staals, Y Zhu, DW Taylor, JE Kornfeld, K Sharma, A Barendregt, ...
Molecular cell 56 (4), 518-530, 2014
2302014
Structure and activity of the RNA-targeting Type III-B CRISPR-Cas complex of Thermus thermophilus
RHJ Staals, Y Agari, S Maki-Yonekura, Y Zhu, DW Taylor, E Van Duijn, ...
Molecular cell 52 (1), 135-145, 2013
2162013
3DM: systematic analysis of heterogeneous superfamily data to discover protein functionalities
RK Kuipers, HJ Joosten, WJH van Berkel, NGH Leferink, E Rooijen, ...
Proteins: Structure, Function, and Bioinformatics 78 (9), 2101-2113, 2010
1542010
NG-Tax, a highly accurate and validated pipeline for analysis of 16S rRNA amplicons from complex biomes
J Ramiro-Garcia, GDA Hermes, C Giatsis, D Sipkema, EG Zoetendal, ...
F1000Research 5, 2016
1242016
Assessment of the pectin degrading enzyme network of Aspergillus niger by functional genomics
ES Martens-Uzunova, PJ Schaap
Fungal Genetics and Biology 46 (1), S170-S179, 2009
1152009
TheAgaricus bisporus hypAgene encodes a hydrophobin and specifically accumulates in peel tissue of mushroom caps during fruit body development
PWJ De Groot, PJ Schaap, ASM Sonnenberg, J Visser, ...
Journal of molecular biology 257 (5), 1008-1018, 1996
1141996
A comprehensive metatranscriptome analysis pipeline and its validation using human small intestine microbiota datasets
MM Leimena, J Ramiro-Garcia, M Davids, B van den Bogert, H Smidt, ...
BMC genomics 14 (1), 1-14, 2013
1082013
An iterative workflow for mining the human intestinal metaproteome
K Rooijers, C Kolmeder, C Juste, J Doré, M de Been, S Boeren, P Galan, ...
BMC genomics 12 (1), 1-11, 2011
1082011
Oxaloacetate hydrolase, the C–C bond lyase of oxalate secreting fungi
Y Han, HJ Joosten, W Niu, Z Zhao, PS Mariano, M McCalman, J Van Kan, ...
Journal of Biological Chemistry 282 (13), 9581-9590, 2007
972007
An inventory of the Aspergillus niger secretome by combining in silico predictions with shotgun proteomics data
M Braaksma, ES Martens-Uzunova, PJ Punt, PJ Schaap
BMC genomics 11 (1), 1-11, 2010
932010
Identification of a gatekeeper residue that prevents dehydrogenases from acting as oxidases
NGH Leferink, MW Fraaije, HJ Joosten, PJ Schaap, A Mattevi, ...
Journal of Biological Chemistry 284 (7), 4392-4397, 2009
922009
Identification and functional analysis of the nuclear localization signals of ribosomal protein L25 from Saccharomyces cerevisiae
PJ Schaap, J van't Riet, CL Woldringh, HA Raué
Journal of molecular biology 221 (1), 225-237, 1991
851991
Genome-scale metabolic model for Lactococcus lactis MG1363 and its application to the analysis of flavor formation
NAL Flahaut, A Wiersma, B van de Bunt, DE Martens, PJ Schaap, ...
Applied microbiology and biotechnology 97 (19), 8729-8739, 2013
842013
MEMOTE for standardized genome-scale metabolic model testing
C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ...
Nature biotechnology 38 (3), 272-276, 2020
832020
Correlated mutation analyses on super‐family alignments reveal functionally important residues
RKP Kuipers, HJ Joosten, E Verwiel, S Paans, J Akerboom, ...
Proteins: Structure, Function, and Bioinformatics 76 (3), 608-616, 2009
792009
An evolutionary conserved D-galacturonic acid metabolic pathway operates across filamentous fungi capable of pectin degradation
ES Martens-Uzunova, PJ Schaap
Fungal Genetics and Biology 45 (11), 1449-1457, 2008
782008
A genomic view on syntrophic versus non-syntrophic lifestyle in anaerobic fatty acid degrading communities
P Worm, JJ Koehorst, M Visser, VT Sedano-Núñez, PJ Schaap, ...
Biochimica et Biophysica Acta (BBA)-Bioenergetics 1837 (12), 2004-2016, 2014
762014
Comprehensive insights into transcriptional adaptation of intracellular mycobacteria by microbe-enriched dual RNA sequencing
RA Rienksma, M Suarez-Diez, HJ Mollenkopf, GM Dolganov, A Dorhoi, ...
BMC genomics 16 (1), 1-15, 2015
752015
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