Raymond K. Auerbach
Raymond K. Auerbach
Data Scientist
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Cited by
Cited by
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57, 2012
Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation
G Li, X Ruan, RK Auerbach, KS Sandhu, M Zheng, P Wang, HM Poh, ...
Cell 148 (1), 84-98, 2012
Integrative Analysis of the Caenorhabditis elegans Genome by the modENCODE Project
MB Gerstein, ZJ Lu, EL Van Nostrand, C Cheng, BI Arshinoff, T Liu, ...
Science 330 (6012), 1775-1787, 2010
A User's Guide to the Encyclopedia of DNA Elements (ENCODE)
B Wold, A Mortazavi, B Williams, G Marinov, D Trout, B King, K McCue, ...
PLoS Biology 9 (4), Art. No. e1001046, 2011
PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls
J Rozowsky, G Euskirchen, RK Auerbach, ZD Zhang, T Gibson, ...
Nature biotechnology 27 (1), 66, 2009
A user's guide to the encyclopedia of DNA elements (ENCODE)
RM Myers, J Stamatoyannopoulos, M Snyder, I Dunham, RC Hardison, ...
PLoS biology 9 (4), 2011
The real cost of sequencing: higher than you think!
A Sboner, XJ Mu, D Greenbaum, RK Auerbach, MB Gerstein
Genome biology 12, 1-10, 2011
Comparative analysis of the transcriptome across distant species
MB Gerstein, J Rozowsky, KK Yan, D Wang, C Cheng, JB Brown, ...
Nature 512 (7515), 445-448, 2014
Mapping accessible chromatin regions using Sono-Seq
RK Auerbach, G Euskirchen, J Rozowsky, N Lamarre-Vincent, ...
Proceedings of the National Academy of Sciences 106 (35), 14926-14931, 2009
Diverse roles and interactions of the SWI/SNF chromatin remodeling complex revealed using global approaches
GM Euskirchen, RK Auerbach, E Davidov, TA Gianoulis, G Zhong, ...
PLoS genetics 7 (3), e1002008, 2011
Genome-Wide Identification of Binding Sites Defines Distinct Functions for Caenorhabditis elegans PHA-4/FOXA in Development and Environmental Response
M Zhong, W Niu, ZJ Lu, M Sarov, JI Murray, J Janette, D Raha, ...
PLoS genetics 6 (2), e1000848, 2010
Phylogeographic reconstruction of a bacterial species with high levels of lateral gene transfer
T Pearson, P Giffard, S Beckstrom-Sternberg, R Auerbach, H Hornstra, ...
BMC biology 7, 1-14, 2009
Phylogeography of Francisella tularensis: Global Expansion of a Highly Fit Clone
AJ Vogler, D Birdsell, LB Price, JR Bowers, SM Beckstrom-Sternberg, ...
Journal of bacteriology 191 (8), 2474-2484, 2009
SWI/SNF chromatin-remodeling factors: multiscale analyses and diverse functions
G Euskirchen, RK Auerbach, M Snyder
Journal of Biological Chemistry 287 (37), 30897-30905, 2012
Efficient yeast ChIP-Seq using multiplex short-read DNA sequencing
P Lefrançois, GM Euskirchen, RK Auerbach, J Rozowsky, T Gibson, ...
BMC genomics 10, 1-18, 2009
Genomic islands from five strains of Burkholderia pseudomallei
A Tuanyok, BR Leadem, RK Auerbach, SM Beckstrom-Sternberg, ...
BMC genomics 9, 1-14, 2008
A Horizontal Gene Transfer Event Defines Two Distinct Groups within Burkholderia pseudomallei That Have Dissimilar Geographic Distributions
A Tuanyok, RK Auerbach, TS Brettin, DC Bruce, AC Munk, JC Detter, ...
Journal of bacteriology 189 (24), 9044-9049, 2007
Prediction and characterization of noncoding RNAs in C. elegans by integrating conservation, secondary structure, and high-throughput sequencing and array data
ZJ Lu, KY Yip, G Wang, C Shou, LDW Hillier, E Khurana, A Agarwal, ...
Genome research 21 (2), 276-285, 2011
Relating genes to function: identifying enriched transcription factors using the ENCODE ChIP-Seq significance tool
RK Auerbach, B Chen, AJ Butte
Bioinformatics 29 (15), 1922-1924, 2013
Complete genomic characterization of a pathogenic A. II strain of Francisella tularensis subspecies tularensis
SM Beckstrom-Sternberg, RK Auerbach, S Godbole, JV Pearson, ...
PloS one 2 (9), e947, 2007
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