JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles A Mathelier, X Zhao, AW Zhang, F Parcy, R Worsley-Hunt, DJ Arenillas, ... Nucleic acids research 42 (D1), D142-D147, 2014 | 1185 | 2014 |
JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles A Mathelier, O Fornes, DJ Arenillas, C Chen, G Denay, J Lee, W Shi, ... Nucleic acids research 44 (D1), D110-D115, 2016 | 1134 | 2016 |
Cancer stemness, intratumoral heterogeneity, and immune response across cancers A Miranda, PT Hamilton, AW Zhang, S Pattnaik, E Becht, A Mezheyeuski, ... Proceedings of the National Academy of Sciences 116 (18), 9020-9029, 2019 | 442 | 2019 |
Divergent modes of clonal spread and intraperitoneal mixing in high-grade serous ovarian cancer A McPherson, A Roth, E Laks, T Masud, A Bashashati, AW Zhang, G Ha, ... Nature genetics 48 (7), 758-767, 2016 | 363 | 2016 |
Interfaces of malignant and immunologic clonal dynamics in ovarian cancer AW Zhang, A McPherson, K Milne, DR Kroeger, PT Hamilton, A Miranda, ... Cell 173 (7), 1755-1769. e22, 2018 | 329 | 2018 |
Probabilistic cell-type assignment of single-cell RNA-seq for tumor microenvironment profiling AW Zhang, C O’Flanagan, EA Chavez, JLP Lim, N Ceglia, A McPherson, ... Nature methods 16 (10), 1007-1015, 2019 | 310 | 2019 |
Genomic consequences of aberrant DNA repair mechanisms stratify ovarian cancer histotypes YK Wang, A Bashashati, MS Anglesio, DR Cochrane, DS Grewal, G Ha, ... Nature genetics 49 (6), 856-865, 2017 | 269 | 2017 |
Dissociation of solid tumor tissues with cold active protease for single-cell RNA-seq minimizes conserved collagenase-associated stress responses CH O’Flanagan, KR Campbell, AW Zhang, F Kabeer, JLP Lim, J Biele, ... Genome biology 20, 1-13, 2019 | 234 | 2019 |
Single-cell transcriptome analysis reveals disease-defining T-cell subsets in the tumor microenvironment of classic Hodgkin lymphoma T Aoki, LC Chong, K Takata, K Milne, M Hav, A Colombo, EA Chavez, ... Cancer discovery 10 (3), 406-421, 2020 | 200 | 2020 |
Ovarian cancer mutational processes drive site-specific immune evasion I Vázquez-García, F Uhlitz, N Ceglia, JLP Lim, M Wu, N Mohibullah, ... Nature 612 (7941), 778-786, 2022 | 132 | 2022 |
Clonal fitness inferred from time-series modelling of single-cell cancer genomes S Salehi, F Kabeer, N Ceglia, M Andronescu, MJ Williams, KR Campbell, ... Nature 595 (7868), 585-590, 2021 | 107 | 2021 |
Integrated structural variation and point mutation signatures in cancer genomes using correlated topic models T Funnell, AW Zhang, D Grewal, S McKinney, A Bashashati, YK Wang, ... PLoS computational biology 15 (2), e1006799, 2019 | 77* | 2019 |
TMEM30A loss-of-function mutations drive lymphomagenesis and confer therapeutically exploitable vulnerability in B-cell lymphoma D Ennishi, S Healy, A Bashashati, S Saberi, C Hother, A Mottok, FC Chan, ... Nature medicine 26 (4), 577-588, 2020 | 73 | 2020 |
Single-cell genomic variation induced by mutational processes in cancer T Funnell, CH O’Flanagan, MJ Williams, A McPherson, S McKinney, ... Nature 612 (7938), 106-115, 2022 | 71 | 2022 |
The Effect of Neutropenia and Filgrastim (G-CSF) in Cancer Patients With COVID-19 Infection AW Zhang, S Morjaria, A Kaltsas, TM Hohl, R Parameswaran, D Patel, ... Clinical Infectious Diseases, ciab534, 2021 | 62* | 2021 |
Cis-regulatory somatic mutations and gene-expression alteration in B-cell lymphomas A Mathelier, C Lefebvre, AW Zhang, DJ Arenillas, J Ding, WW Wasserman, ... Genome biology 16, 1-17, 2015 | 50 | 2015 |
Deep learning-based histotype diagnosis of ovarian carcinoma whole-slide pathology images H Farahani, J Boschman, D Farnell, A Darbandsari, A Zhang, ... Modern Pathology 35 (12), 1983-1990, 2022 | 44 | 2022 |
Tumor-associated antigen PRAME exhibits dualistic functions that are targetable in diffuse large B cell lymphoma K Takata, LC Chong, D Ennishi, T Aoki, MY Li, A Thakur, S Healy, ... The Journal of Clinical Investigation 132 (10), 2022 | 22 | 2022 |
Rethinking the need for a platelet transfusion threshold of 50 × 109/L for lumbar puncture in cancer patients HH Chung, S Morjaria, J Frame, M Riley, AW Zhang, SC Martin, A Bhatia, ... Transfusion 60 (10), 2243-2249, 2020 | 14 | 2020 |
Projecting COVID-19 disease severity in cancer patients using purposefully-designed machine learning S Navlakha, S Morjaria, R Perez-Johnston, A Zhang, Y Taur BMC infectious diseases 21 (1), 391, 2021 | 11 | 2021 |