| Diversity and dynamics of the Drosophila transcriptome JB Brown, N Boley, R Eisman, GE May, MH Stoiber, MO Duff, BW Booth, ... Nature 512 (7515), 393-399, 2014 | 719 | 2014 |
| Comparative analysis of the transcriptome across distant species MB Gerstein, J Rozowsky, KK Yan, D Wang, C Cheng, JB Brown, ... Nature 512 (7515), 445-448, 2014 | 328 | 2014 |
| De novo Identification of DNA Modifications Enabled by Genome-Guided Nanopore Signal Processing M Stoiber, J Quick, R Egan, J Eun Lee, S Celniker, RK Neely, N Loman, ... BioRxiv, 094672, 2016 | 243 | 2016 |
| Low-frequency and rare exome chip variants associate with fasting glucose and type 2 diabetes susceptibility J Wessel, AY Chu, SM Willems, S Wang, H Yaghootkar, JA Brody, ... Nature communications 6 (1), 5897, 2015 | 225 | 2015 |
| Genome-guided transcript assembly by integrative analysis of RNA sequence data N Boley, MH Stoiber, BW Booth, KH Wan, RA Hoskins, PJ Bickel, ... Nature biotechnology 32 (4), 341-346, 2014 | 61 | 2014 |
| SOS2 and ACP1 loci identified through large-scale exome chip analysis regulate kidney development and function M Li, Y Li, O Weeks, V Mijatovic, A Teumer, JE Huffman, G Tromp, ... Journal of the American Society of Nephrology 28 (3), 981-994, 2017 | 50 | 2017 |
| BasecRAWller: Streaming nanopore basecalling directly from raw signal M Stoiber, J Brown BioRxiv, 133058, 2017 | 48 | 2017 |
| Early transcriptional response pathways in Daphnia magna are coordinated in networks of crustacean‐specific genes L Orsini, JB Brown, O Shams Solari, D Li, S He, R Podicheti, MH Stoiber, ... Molecular ecology 27 (4), 886-897, 2018 | 47 | 2018 |
| Diverse Hormone Response Networks in 41 Independent Drosophila Cell Lines M Stoiber, S Celniker, L Cherbas, B Brown, P Cherbas G3: Genes, Genomes, Genetics 6 (3), 683-694, 2016 | 46 | 2016 |
| Extensive cross-regulation of post-transcriptional regulatory networks in Drosophila M Stoiber, S Olson, G May, M Duff, J Manent, R Obar, ... Genome Research, 2015 | 32 | 2015 |
| Age-related gene expression in luminal epithelial cells is driven by a microenvironment made from myoepithelial cells M Miyano, RW Sayaman, MH Stoiber, CH Lin, MR Stampfer, JB Brown, ... Aging (Albany NY) 9 (10), 2026, 2017 | 29 | 2017 |
| De novo identification of DNA modifications enabled by genome-guided nanopore signal processing. bioRxiv. 094672 M Stoiber, J Quick, R Egan, JE Lee, S Celniker, RK Neely, N Loman, ... DOI 10, 094672, 2017 | 28 | 2017 |
| Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements D Baranasic, M Hörtenhuber, PJ Balwierz, T Zehnder, AK Mukarram, ... Nature genetics 54 (7), 1037-1050, 2022 | 26 | 2022 |
| *-DCC: A platform to collect, annotate, and explore a large variety of sequencing experiments M Hörtenhuber, AK Mukarram, MH Stoiber, JB Brown, CO Daub GigaScience 9 (3), giaa024, 2020 | 7 | 2020 |
| De novo identification of DNA modifications enabled by genome-guided nanopore signal processing. bioRxiv MH Stoiber, J Quick, R Egan, JE Lee, SE Celniker, R Neely, N Loman, ... | 7 | 2016 |
| Integrated annotation and analysis of genomic features reveal new types of functional elements and large-scale epigenetic phenomena in the developing zebrafish D Baranasic, M Hörtenhuber, P Balwierz, T Zehnder, AK Mukarram, ... bioRxiv, 2021.08. 09.454869, 2021 | 6 | 2021 |
| Nanopore sequencing base calling M Stoiber, J Brown US Patent App. 16/325,357, 2019 | 1 | 2019 |
| Detecting m6A RNA modification from nanopore sequencing using a semi-supervised learning framework H Teng, M Stoiber, Z Bar-Joseph, C Kingsford bioRxiv, 2024.01. 06.574484, 2024 | | 2024 |
| Directly detect and phase genomic 5mC methylation with high reproducibility and low bias using Nanopore sequencing R Esteban, IA Vasilescu, MH Stoiber, DJ Turner, D Stoddart, E Harrington, ... EUROPEAN JOURNAL OF HUMAN GENETICS 30 (SUPPL 1), 549-549, 2022 | | 2022 |
| DCC: A platform to collect, annotate, and explore a large variety of sequencing M Hörtenhuber, AK Mukarram, MH Stoiber GigaScience, 9 (3), 2020 | | 2020 |
James B. BrownLawrence Berkeley National Laboratory; UC Berkeley; Arva Intelligence, Inc.Verified email at lbl.gov
