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Natalie Saini
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Year
Pan-cancer analysis of whole genomes
Nature 578 (7793), 82-93, 2020
1662*2020
An APOBEC3A hypermutation signature is distinguishable from the signature of background mutagenesis by APOBEC3B in human cancers
K Chan, SA Roberts, LJ Klimczak, JF Sterling, N Saini, EP Malc, J Kim, ...
Nature genetics 47 (9), 1067-1072, 2015
4042015
Migrating bubble during break-induced replication drives conservative DNA synthesis
N Saini, S Ramakrishnan, R Elango, S Ayyar, Y Zhang, A Deem, G Ira, ...
Nature 502 (7471), 389-392, 2013
3492013
Molecular evolution of early-onset prostate cancer identifies molecular risk markers and clinical trajectories
C Gerhauser, F Favero, T Risch, R Simon, L Feuerbach, Y Assenov, ...
Cancer cell 34 (6), 996-1011. e8, 2018
2312018
The impact of environmental and endogenous damage on somatic mutation load in human skin fibroblasts
N Saini, SA Roberts, LJ Klimczak, K Chan, SA Grimm, S Dai, DC Fargo, ...
PLoS genetics 12 (10), 2016
1012016
Genomic and evolutionary classification of lung cancer in never smokers
T Zhang, P Joubert, N Ansari-Pour, W Zhao, PH Hoang, R Lokanga, ...
Nature genetics 53 (9), 1348-1359, 2021
992021
When secondary comes first–the importance of non-canonical DNA structures
N Saini, Y Zhang, K Usdin, KS Lobachev
Biochimie 95 (2), 117-123, 2013
812013
Genome-wide screen identifies pathways that govern GAA/TTC repeat fragility and expansions in dividing and nondividing yeast cells
Y Zhang, AA Shishkin, Y Nishida, D Marcinkowski-Desmond, N Saini, ...
Molecular cell 48 (2), 254-265, 2012
652012
Infectious vaccine-derived rubella viruses emerge, persist, and evolve in cutaneous granulomas of children with primary immunodeficiencies
L Perelygina, M Chen, S Suppiah, A Adebayo, E Abernathy, M Dorsey, ...
PLoS pathogens 15 (10), e1008080, 2019
602019
Similarity between mutation spectra in hypermutated genomes of rubella virus and in SARS-CoV-2 genomes accumulated during the COVID-19 pandemic
LJ Klimczak, TA Randall, N Saini, JL Li, DA Gordenin
PLoS One 15 (10), e0237689, 2020
582020
APOBEC3B cytidine deaminase targets the non-transcribed strand of tRNA genes in yeast
N Saini, SA Roberts, JF Sterling, EP Malc, PA Mieczkowski, DA Gordenin
DNA repair 53, 4-14, 2017
502017
Repair of multiple simultaneous double-strand breaks causes bursts of genome-wide clustered hypermutation
CJ Sakofsky, N Saini, LJ Klimczak, K Chan, EP Malc, PA Mieczkowski, ...
PLoS Biology 17 (9), e3000464, 2019
382019
Mutational signatures of redox stress in yeast single-strand DNA and of aging in human mitochondrial DNA share a common feature
NP Degtyareva, N Saini, JF Sterling, VC Placentra, LJ Klimczak, ...
PLoS biology 17 (5), e3000263, 2019
352019
Hypermutation in single-stranded DNA
N Saini, DA Gordenin
DNA repair 91, 102868, 2020
342020
Germline determinants of the somatic mutation landscape in 2,642 cancer genomes
SM Waszak, G Tiao, B Zhu, T Rausch, F Muyas, B Rodriguez-Martin, ...
BioRxiv, 208330, 2017
342017
UV-exposure, endogenous DNA damage, and DNA replication errors shape the spectra of genome changes in human skin
N Saini, CK Giacobone, LJ Klimczak, BN Papas, AB Burkholder, JL Li, ...
PLoS genetics 17 (1), e1009302, 2021
332021
Mutation signatures specific to DNA alkylating agents in yeast and cancers
N Saini, JF Sterling, CJ Sakofsky, CK Giacobone, LJ Klimczak, ...
Nucleic acids research 48 (7), 3692-3707, 2020
322020
Genome-wide screen reveals replication pathway for quasi-palindrome fragility dependent on homologous recombination
Y Zhang, N Saini, Z Sheng, KS Lobachev
PLoS genetics 9 (12), e1003979, 2013
312013
Fragile DNA Motifs Trigger Mutagenesis at Distant Chromosomal Loci in Saccharomyces cerevisiae
N Saini, Y Zhang, Y Nishida, Z Sheng, S Choudhury, P Mieczkowski, ...
PLoS genetics 9 (6), e1003551, 2013
302013
Somatic mutation load and spectra: A record of DNA damage and repair in healthy human cells
N Saini, DA Gordenin
Environmental and molecular mutagenesis 59 (8), 672-686, 2018
252018
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