Three-dimensional folding and functional organization principles of the Drosophila genome T Sexton, E Yaffe, E Kenigsberg, F Bantignies, B Leblanc, M Hoichman, ... Cell 148 (3), 458-472, 2012 | 2035 | 2012 |
Single-cell Hi-C reveals cell-to-cell variability in chromosome structure T Nagano, Y Lubling, TJ Stevens, S Schoenfelder, E Yaffe, W Dean, ... Nature 502 (7469), 59-64, 2013 | 1609 | 2013 |
Probabilistic modeling of Hi-C contact maps eliminates systematic biases to characterize global chromosomal architecture E Yaffe, A Tanay Nature genetics 43 (11), 1059-1065, 2011 | 710 | 2011 |
Cohesin‐mediated interactions organize chromosomal domain architecture S Sofueva, E Yaffe, WC Chan, D Georgopoulou, M Vietri Rudan, ... The EMBO journal 32 (24), 3119-3129, 2013 | 468 | 2013 |
Comparative analysis of DNA replication timing reveals conserved large-scale chromosomal architecture E Yaffe, S Farkash-Amar, A Polten, Z Yakhini, A Tanay, I Simon PLoS genetics 6 (7), e1001011, 2010 | 194 | 2010 |
Single-cell Hi-C for genome-wide detection of chromatin interactions that occur simultaneously in a single cell T Nagano, Y Lubling, E Yaffe, SW Wingett, W Dean, A Tanay, P Fraser Nature protocols 10 (12), 1986-2003, 2015 | 168 | 2015 |
MolAxis: efficient and accurate identification of channels in macromolecules E Yaffe, D Fishelovitch, HJ Wolfson, D Halperin, R Nussinov Proteins: Structure, Function, and Bioinformatics 73 (1), 72-86, 2008 | 168 | 2008 |
Tracking microbial evolution in the human gut using Hi-C reveals extensive horizontal gene transfer, persistence and adaptation E Yaffe, DA Relman Nature microbiology 5 (2), 343-353, 2020 | 123 | 2020 |
Profiling the human intestinal environment under physiological conditions D Shalon, RN Culver, JA Grembi, J Folz, PV Treit, H Shi, FA Rosenberger, ... Nature 617 (7961), 581-591, 2023 | 97 | 2023 |
MolAxis: a server for identification of channels in macromolecules E Yaffe, D Fishelovitch, HJ Wolfson, D Halperin, R Nussinov Nucleic Acids Research 36 (suppl_2), W210-W215, 2008 | 77 | 2008 |
Cooperativity, specificity, and evolutionary stability of Polycomb targeting in Drosophila B Schuettengruber, NO Elkayam, T Sexton, M Entrevan, S Stern, ... Cell reports 9 (1), 219-233, 2014 | 75 | 2014 |
Architectures for Controller Based CDP. G Laden, P Ta-Shma, E Yaffe, M Factor, S Fienblit FAST 7, 21-36, 2007 | 67 | 2007 |
Approximating the pathway axis and the persistence diagram of a collection of balls in 3-space E Yaffe, D Halperin Proceedings of the twenty-fourth annual symposium on Computational geometry …, 2008 | 14 | 2008 |
Profiling of the human intestinal microbiome and bile acids under physiologic conditions using an ingestible sampling device D Shalon, RN Culver, JA Grembi, J Folz, P Treit, L Dethlefsen, X Meng, ... bioRxiv, 2022.01. 19.476920, 2022 | 8 | 2022 |
Chromosome folding: driver or passenger of epigenetic state? T Sexton, E Yaffe Cold Spring Harbor perspectives in biology 7 (2), a018721, 2015 | 8 | 2015 |
Efficient construction of pathways in the complement of the union of balls in R3 E Yaffe Tel Aviv University, 2007 | 5 | 2007 |
Benchmarking and testing OSD for correctness and compliance D Naor, P Reshef, O Rodeh, A Shafrir, A Wolman, E Yaffe Haifa Verification Conference, 158-176, 2005 | 4 | 2005 |
A short course of antibiotics selects for persistent resistance in the human gut E Yaffe, L Dethlefsen, AV Patankar, C Gui, S Holmes, DA Relman bioRxiv, 2023.09. 04.556257, 2023 | | 2023 |
Corrigendum: Precise genotyping of circular mobile elements from metagenomic data uncovers human-associated plasmids with recent common ancestors N Shalon, DA Relman, E Yaffe Genome Research 32 (6), 12291, 2022 | | 2022 |
Precise genotyping of circular mobile elements from metagenomic data uncovers human-associated plasmids with recent common ancestors N Shalon, DA Relman, E Yaffe Genome Research 32 (5), 986-1003, 2022 | | 2022 |