Jonathan Foox
Jonathan Foox
Weill Cornell Medicine
Verified email at amnh.org - Homepage
Title
Cited by
Cited by
Year
Comprehensive benchmarking and ensemble approaches for metagenomic classifiers
ABR McIntyre, R Ounit, E Afshinnekoo, RJ Prill, E Hénaff, N Alexander, ...
Genome biology 18 (1), 182, 2017
1092017
Genome assembly and geospatial phylogenomics of the bed bug Cimex lectularius
JA Rosenfeld, D Reeves, MR Brugler, A Narechania, S Simon, R Durrett, ...
Nature communications 7 (1), 1-10, 2016
552016
The Road to Cnidaria: History of Phylogeny of the Myxozoa
J Foox, ME Siddall
Journal of Parasitology, 2015
352015
Genomic methods and microbiological technologies for profiling novel and extreme environments for the Extreme Microbiome Project (XMP)
S Tighe, E Afshinnekoo, TM Rock, K McGrath, N Alexander, A McIntyre, ...
Journal of biomolecular techniques: JBT 28 (1), 31, 2017
252017
Multiplexed pyrosequencing of nine sea anemone (Cnidaria: Anthozoa: Hexacorallia: Actiniaria) mitochondrial genomes
J Foox, M Brugler, ME Siddall, E Rodríguez
Mitochondrial DNA Part A 27 (4), 2826-2832, 2016
142016
Applying evolutionary genetics to developmental toxicology and risk assessment
MCK Leung, AC Procter, JV Goldstone, J Foox, R DeSalle, CJ Mattingly, ...
Reproductive Toxicology 69, 174-186, 2017
92017
Insect genome content phylogeny and functional annotation of core insect genomes
JA Rosenfeld, J Foox, R DeSalle
Molecular phylogenetics and evolution 97, 224-232, 2016
82016
In silico hybridization enables transcriptomic illumination of the nature and evolution of Myxozoa
J Foox, M Ringuette, SS Desser, ME Siddall
BMC genomics 16 (1), 840, 2015
82015
The mitogenome of the bed bug Cimex lectularius (Hemiptera: Cimicidae)
SO Kolokotronis, J Foox, JA Rosenfeld, MR Brugler, D Reeves, JB Benoit, ...
Mitochondrial DNA Part B 1 (1), 425-427, 2016
52016
Data for constructing insect genome content matrices for phylogenetic analysis and functional annotation
J Rosenfeld, J Foox, R DeSalle
Data in brief 6, 279-281, 2016
22016
Host, Viral, and Environmental Transcriptome Profiles of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2)
DJ Butler, C Mozsary, C Meydan, DC Danko, J Foox, J Rosiene, ...
bioRxiv, 2020
12020
Shotgun Transcriptome and Isothermal Profiling of SARS-CoV-2 Infection Reveals Unique Host Responses, Viral Diversification, and Drug Interactions
DJ Butler, C Mozsary, C Meydan, D Danko, J Foox, J Rosiene, A Shaiber, ...
bioRxiv, 2020
2020
Haplotype Diversity and Sequence Heterogeneity of Human Telomeres
K Grigorev, J Foox, D Bezdan, D Butler, JJ Luxton, J Reed, C Meydan, ...
bioRxiv, 2020
2020
A Multi-Platform Assessment of DNA Sequencing Reproducibility Using Human and Bacterial Genomes
J Foox
Journal of Biomolecular Techniques: JBT 30 (Suppl), S43, 2019
2019
Correction to: Comprehensive benchmarking and ensemble approaches for metagenomic classifiers
ABR McIntyre, R Ounit, E Afshinnekoo, RJ Prill, E Hénaff, N Alexander, ...
Genome biology 20 (1), 72, 2019
2019
Comprehensive benchmarking and ensemble approaches for metagenomic classifiers (vol 18, 182, 2017)
ABR McIntyre, R Ounit, E Afshinnekoo, RJ Prill, E Henaff, N Alexander, ...
GENOME BIOLOGY 20, 2019
2019
The mitogenome of the bed bug Cimex lectularius (Hemiptera: Cimicidae)(vol 1, pg 425, 2016)
SO Kolokotronis, J Foox, JA Rosenfeld, MR Brugler, D Reeves, JB Benoit, ...
MITOCHONDRIAL DNA PART B-RESOURCES 1, 646-646, 2016
2016
Morphology, Molecular Systematics, and Phylogenetics of a NovelCiliate, Scindostoma hanania (Alveolata: Ciliophora)
J Foox
The George Washington University, 2013
2013
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Articles 1–18