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Wei Ouyang
Wei Ouyang
Assistant Professor, Science for Life Laboratory | KTH Royal Institute of Technology, Stockholm
Verified email at kth.se - Homepage
Title
Cited by
Cited by
Year
Deep learning massively accelerates super-resolution localization microscopy
W Ouyang, A Aristov, M Lelek, X Hao, C Zimmer
Nature biotechnology 36 (5), 460-468, 2018
4872018
IoT-based remote pain monitoring system: From device to cloud platform
G Yang, M Jiang, W Ouyang, G Ji, H Xie, AM Rahmani, P Liljeberg, ...
IEEE journal of biomedical and health informatics 22 (6), 1711-1719, 2017
1772017
DeepImageJ: A user-friendly environment to run deep learning models in ImageJ
E Gómez-de-Mariscal, C García-López-de-Haro, W Ouyang, L Donati, ...
Nature Methods 18 (10), 1192-1195, 2021
1702021
ImJoy: an open-source computational platform for the deep learning era
W Ouyang, F Mueller, M Hjelmare, E Lundberg, C Zimmer
Nature methods 16 (12), 1199-1200, 2019
1192019
Analysis of the human protein atlas image classification competition
W Ouyang, CF Winsnes, M Hjelmare, AJ Cesnik, L Åkesson, H Xu, ...
Nature methods 16 (12), 1254-1261, 2019
1022019
Mapping the nucleolar proteome reveals a spatiotemporal organization related to intrinsic protein disorder
L Stenström, D Mahdessian, C Gnann, AJ Cesnik, W Ouyang, ...
Molecular systems biology 16 (8), e9469, 2020
1012020
Pycro-Manager: open-source software for customized and reproducible microscope control
H Pinkard, N Stuurman, IE Ivanov, NM Anthony, W Ouyang, B Li, B Yang, ...
Nature methods 18 (3), 226-228, 2021
632021
A computational framework to study sub-cellular RNA localization
A Samacoits, R Chouaib, A Safieddine, AM Traboulsi, W Ouyang, ...
Nature Communications 9 (1), 4584, 2018
582018
FISH-quant v2: a scalable and modular tool for smFISH image analysis
A Imbert, W Ouyang, A Safieddine, E Coleno, C Zimmer, E Bertrand, ...
Rna 28 (6), 786-795, 2022
572022
A multi-scale map of cell structure fusing protein images and interactions
Y Qin, EL Huttlin, CF Winsnes, ML Gosztyla, L Wacheul, MR Kelly, ...
Nature 600 (7889), 536-542, 2021
52*2021
Bioimage model zoo: a community-driven resource for accessible deep learning in bioimage analysis
W Ouyang, F Beuttenmueller, E Gómez-de-Mariscal, C Pape, T Burke, ...
bioRxiv, 2022.06. 07.495102, 2022
322022
The imaging tsunami: computational opportunities and challenges
W Ouyang, C Zimmer
Current Opinion in Systems Biology 4, 105-113, 2017
322017
OME-Zarr: a cloud-optimized bioimaging file format with international community support
J Moore, D Basurto-Lozada, S Besson, J Bogovic, J Bragantini, EM Brown, ...
bioRxiv, 2023.02. 17.528834, 2023
282023
An Open‐Source Modular Framework for Automated Pipetting and Imaging Applications
W Ouyang, RW Bowman, H Wang, KE Bumke, JT Collins, O Spjuth, ...
Advanced biology 6 (4), 2101063, 2022
202022
Analysis of the human protein atlas weakly supervised single-cell classification competition
T Le, CF Winsnes, U Axelsson, H Xu, J Mohanakrishnan Kaimal, ...
Nature Methods 19 (10), 1221-1229, 2022
122022
Super-resolution visualization and modeling of human chromosomal regions reveals cohesin-dependent loop structures
X Hao, JJ Parmar, B Lelandais, A Aristov, W Ouyang, C Weber, C Zimmer
Genome biology 22 (1), 1-20, 2021
102021
Interactive biomedical segmentation tool powered by deep learning and ImJoy
W Ouyang, T Le, H Xu, E Lundberg
F1000Research 10, 142, 2021
102021
Uncovering molecular grammars of intrinsically disordered regions that organize nucleolar fibrillar centers
MR King, AZ Lin, KM Ruff, M Farag, W Ouyang, MD Vahey, E Lundberg, ...
bioRxiv, 2022.11. 05.515292, 2022
82022
ShareLoc—an open platform for sharing localization microscopy data
W Ouyang, J Bai, MK Singh, C Leterrier, P Barthelemy, SFH Barnett, ...
Nature Methods 19 (11), 1331-1333, 2022
7*2022
Moving beyond the desktop: prospects for practical bioimage analysis via the web
W Ouyang, KW Eliceiri, BA Cimini
Frontiers in Bioinformatics 3, 2023
32023
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Articles 1–20