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Jesse RR Zaneveld
Jesse RR Zaneveld
Assistant Professor, Division of Biological Sciences, University of Washington, Bothell
Verified email at uw.edu
Title
Cited by
Cited by
Year
QIIME allows analysis of high-throughput community sequencing data
JG Caporaso, J Kuczynski, J Stombaugh, K Bittinger, FD Bushman, ...
Nature methods 7 (5), 335-336, 2010
285372010
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
MGI Langille, J Zaneveld, JG Caporaso, D McDonald, D Knights, ...
Nature biotechnology 31 (9), 814-821, 2013
64692013
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
5903*2019
A communal catalogue reveals Earth’s multiscale microbial diversity
LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ...
Nature, 2017
13662017
Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients
N Fierer, CL Lauber, KS Ramirez, J Zaneveld, MA Bradford, R Knight
The ISME journal 6 (5), 1007-1017, 2012
12482012
PICRUSt2 for prediction of metagenome functions
GM Douglas, VJ Maffei, JR Zaneveld, SN Yurgel, JR Brown, CM Taylor, ...
Nature Biotechnology 38 (6), 685-688, 2020
1179*2020
Normalization and microbial differential abundance strategies depend upon data characteristics
S Weiss, ZZ Xu, S Peddada, A Amir, K Bittinger, A Gonzalez, C Lozupone, ...
Microbiome 5 (1), 1-18, 2017
11762017
Bayesian community-wide culture-independent microbial source tracking
D Knights, J Kuczynski, ES Charlson, J Zaneveld, MC Mozer, RG Collman, ...
Nature methods 8 (9), 761-763, 2011
9622011
Best practices for analysing microbiomes
R Knight, A Vrbanac, BC Taylor, A Aksenov, C Callewaert, J Debelius, ...
Nature Reviews Microbiology 16 (7), 410-422, 2018
8772018
Stress and stability: applying the Anna Karenina principle to animal microbiomes
JR Zaneveld, R McMinds, R Vega Thurber
Nature Microbiology, 2017
4442017
Chronic nutrient enrichment increases prevalence and severity of coral disease and bleaching
RL Vega Thurber, DE Burkepile, C Fuchs, AA Shantz, R McMinds, ...
Global change biology 20 (2), 544-554, 2014
3922014
Overfishing and nutrient pollution interact with temperature to disrupt coral reefs down to microbial scales
JR Zaneveld, DE Burkepile, AA Shantz, CE Pritchard, R McMinds, ...
Nature communications 7 (1), 1-12, 2016
3442016
Pan-genome of the dominant human gut-associated archaeon, Methanobrevibacter smithii, studied in twins
EE Hansen, CA Lozupone, FE Rey, M Wu, JL Guruge, A Narra, ...
Proceedings of the National Academy of Sciences 108 (Supplement 1), 4599-4606, 2011
2182011
Natural volcanic CO2 seeps reveal future trajectories for host–microbial associations in corals and sponges
KM Morrow, DG Bourne, C Humphrey, ES Botté, P Laffy, J Zaneveld, ...
The ISME journal 9 (4), 894-908, 2015
2112015
Direct sequencing of the human microbiome readily reveals community differences
J Kuczynski, EK Costello, DR Nemergut, J Zaneveld, CL Lauber, ...
Genome biology 11 (5), 1-9, 2010
1832010
Coral-associated bacteria demonstrate phylosymbiosis and cophylogeny
FJ Pollock, R McMinds, S Smith, DG Bourne, BL Willis, M Medina, ...
Nature Communications 9 (1), 1-13, 2018
1652018
Identifying genomic and metabolic features that can underlie early successional and opportunistic lifestyles of human gut symbionts
C Lozupone, K Faust, J Raes, JJ Faith, DN Frank, J Zaneveld, JI Gordon, ...
Genome Research, 2012
1612012
Human-associated microbial signatures: examining their predictive value
D Knights, LW Parfrey, J Zaneveld, C Lozupone, R Knight
Cell host & microbe 10 (4), 292-296, 2011
1422011
Host-bacterial coevolution and the search for new drug targets
J Zaneveld, PJ Turnbaugh, C Lozupone, RE Ley, M Hamady, JI Gordon, ...
Current opinion in chemical biology 12 (1), 109-114, 2008
1202008
Are all horizontal gene transfers created equal? Prospects for mechanism-based studies of HGT patterns
JR Zaneveld, DR Nemergut, R Knight
Microbiology 154 (1), 1-15, 2008
1202008
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