Bonnie Berger
Bonnie Berger
Verified email at mit.edu - Homepage
Title
Cited by
Cited by
Year
Ancient human genomes suggest three ancestral populations for present-day Europeans
I Lazaridis, N Patterson, A Mittnik, G Renaud, S Mallick, K Kirsanow, ...
Nature 513 (7518), 409-413, 2014
10282014
SARS-CoV-2 receptor ACE2 is an interferon-stimulated gene in human airway epithelial cells and is detected in specific cell subsets across tissues
CGK Ziegler, SJ Allon, SK Nyquist, IM Mbano, VN Miao, CN Tzouanas, ...
Cell 181 (5), 1016-1035. e19, 2020
9262020
Identification of functional elements and regulatory circuits by Drosophila modENCODE
S Roy, J Ernst, PV Kharchenko, P Kheradpour, N Negre, ML Eaton, ...
Science 330 (6012), 1787-1797, 2010
8942010
MultiCoil: a program for predicting two‐and three‐stranded coiled coils
E Wolf, PS Kim, B Berger
Protein Science 6 (6), 1179-1189, 1997
8531997
Global alignment of multiple protein interaction networks with application to functional orthology detection
R Singh, J Xu, B Berger
Proceedings of the National Academy of Sciences 105 (35), 12763-12768, 2008
831*2008
Efficient Bayesian mixed-model analysis increases association power in large cohorts
PR Loh, G Tucker, BK Bulik-Sullivan, BJ Vilhjalmsson, HK Finucane, ...
Nature genetics 47 (3), 284, 2015
7942015
Predicting coiled coils by use of pairwise residue correlations
B Berger, DB Wilson, E Wolf, T Tonchev, M Milla, PS Kim
Proceedings of the National Academy of Sciences 92 (18), 8259-8263, 1995
7591995
ARACHNE: a whole-genome shotgun assembler
S Batzoglou, DB Jaffe, K Stanley, J Butler, S Gnerre, E Mauceli, B Berger, ...
Genome research 12 (1), 177-189, 2002
7242002
Protein folding in the hydrophobic-hydrophilic (HP) is NP-complete
B Berger, T Leighton
Proceedings of the second annual international conference on Computational …, 1998
6371998
A community effort to assess and improve drug sensitivity prediction algorithms
JC Costello, LM Heiser, E Georgii, M Gönen, MP Menden, NJ Wang, ...
Nature biotechnology 32 (12), 1202-1212, 2014
5202014
Human and mouse gene structure: comparative analysis and application to exon prediction
S Batzoglou, L Pachter, JP Mesirov, B Berger, ES Lander
Genome research 10 (7), 950-958, 2000
5132000
Herpesviral protein networks and their interaction with the human proteome
P Uetz, YA Dong, C Zeretzke, C Atzler, A Baiker, B Berger, SV Rajagopala, ...
Science 311 (5758), 239-242, 2006
4702006
Paircoil2: improved prediction of coiled coils from sequence
AV McDonnell, T Jiang, AE Keating, B Berger
Bioinformatics 22 (3), 356-358, 2006
4282006
IsoRankN: spectral methods for global alignment of multiple protein networks
CS Liao, K Lu, M Baym, R Singh, B Berger
Bioinformatics 25 (12), i253-i258, 2009
4082009
An integrative approach to ortholog prediction for disease-focused and other functional studies
Y Hu, I Flockhart, A Vinayagam, C Bergwitz, B Berger, N Perrimon, ...
BMC bioinformatics 12 (1), 1-16, 2011
3722011
Widespread macromolecular interaction perturbations in human genetic disorders
N Sahni, S Yi, M Taipale, JIF Bass, J Coulombe-Huntington, F Yang, ...
Cell 161 (3), 647-660, 2015
3592015
Inferring admixture histories of human populations using linkage disequilibrium
PR Loh, M Lipson, N Patterson, P Moorjani, JK Pickrell, D Reich, B Berger
Genetics 193 (4), 1233-1254, 2013
3342013
Computational solutions for omics data
B Berger, J Peng, M Singh
Nature reviews genetics 14 (5), 333-346, 2013
3052013
A quantitative chaperone interaction network reveals the architecture of cellular protein homeostasis pathways
M Taipale, G Tucker, J Peng, I Krykbaeva, ZY Lin, B Larsen, H Choi, ...
Cell 158 (2), 434-448, 2014
2942014
Women in computer science: no shortage here!
M Othman, R Latih
Communications of the ACM 49 (3), 111-114, 2006
284*2006
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Articles 1–20