Karim Gharbi
Karim Gharbi
Earlham Institute
Verified email at earlham.ac.uk
TitleCited byYear
Butterfly genome reveals promiscuous exchange of mimicry adaptations among species
KK Dasmahapatra, JR Walters, AD Briscoe, JW Davey, A Whibley, ...
Nature 487 (7405), 94, 2012
7852012
A microsatellite linkage map of rainbow trout (Oncorhynchus mykiss) characterized by large sex-specific differences in recombination rates
T Sakamoto, RG Danzmann, K Gharbi, P Howard, A Ozaki, SK Khoo, ...
Genetics 155 (3), 1331-1345, 2000
5282000
How many biological replicates are needed in an RNA-seq experiment and which differential expression tool should you use?
NJ Schurch, P Schofield, M Gierliński, C Cole, A Sherstnev, V Singh, ...
Rna 22 (6), 839-851, 2016
2952016
Special features of RAD Sequencing data: implications for genotyping
JW Davey, T Cezard, P Fuentes‐Utrilla, C Eland, K Gharbi, ML Blaxter
Molecular ecology 22 (11), 3151-3164, 2013
2692013
Comparative genome analysis of the primary sex-determining locus in salmonid fishes
RA Woram, K Gharbi, T Sakamoto, B Hoyheim, LE Holm, K Naish, ...
Genome research 13 (2), 272-280, 2003
2182003
The effect of RAD allele dropout on the estimation of genetic variation within and between populations
M Gautier, K Gharbi, T Cezard, J Foucaud, C Kerdelhué, P Pudlo, ...
Molecular ecology 22 (11), 3165-3178, 2013
2002013
Parentage assignment using microsatellites in turbot (Scophthalmus maximus) and rainbow trout (Oncorhynchus mykiss) hatchery populations
A Estoup, K Gharbi, M SanCristobal, C Chevalet, P Haffray, R Guyomard
Canadian Journal of Fisheries and Aquatic Sciences 55 (3), 715-723, 1998
1771998
A linkage map for brown trout (Salmo trutta): chromosome homeologies and comparative genome organization with other salmonid fish
K Gharbi, A Gautier, RG Danzmann, S Gharbi, T Sakamoto, B Hřyheim, ...
Genetics 172 (4), 2405-2419, 2006
1692006
Development and validation of a high density SNP genotyping array for Atlantic salmon (Salmo salar)
RD Houston, JB Taggart, T Cézard, M Bekaert, NR Lowe, A Downing, ...
BMC genomics 15 (1), 90, 2014
1472014
A comparative analysis of the rainbow trout genome with 2 other species of fish (Arctic charr and Atlantic salmon) within the tetraploid derivative Salmonidae family (subfamily …
RG Danzmann, M Cairney, WS Davidson, MM Ferguson, K Gharbi, ...
Genome 48 (6), 1037-1051, 2005
1382005
A genetic linkage map for Arctic char (Salvelinus alpinus): evidence for higher recombination rates and segregation distortion in hybrid versus pure strain mapping parents
RA Woram, C McGowan, JA Stout, K Gharbi, MM Ferguson, B Hoyheim, ...
Genome 47 (2), 304-315, 2004
1342004
Estimation of population allele frequencies from next‐generation sequencing data: pool‐versus individual‐based genotyping
M Gautier, J Foucaud, K Gharbi, T Cézard, M Galan, A Loiseau, ...
Molecular Ecology 22 (14), 3766-3779, 2013
1222013
Linkage maps of the Atlantic salmon (Salmo salar) genome derived from RAD sequencing
S Gonen, NR Lowe, T Cezard, K Gharbi, SC Bishop, RD Houston
BMC genomics 15 (1), 166, 2014
1182014
Distribution of ancestral proto-Actinopterygian chromosome arms within the genomes of 4R-derivative salmonid fishes (Rainbow trout and Atlantic salmon)
RG Danzmann, EA Davidson, MM Ferguson, K Gharbi, BF Koop, ...
BMC genomics 9 (1), 557, 2008
1182008
Mapping and validation of the major sex-determining region in Nile tilapia (Oreochromis niloticus L.) using RAD sequencing
C Palaiokostas, M Bekaert, MGQ Khan, JB Taggart, K Gharbi, ...
PLoS One 8 (7), e68389, 2013
1132013
Characterisation of QTL-linked and genome-wide restriction site-associated DNA (RAD) markers in farmed Atlantic salmon
RD Houston, JW Davey, SC Bishop, NR Lowe, JC Mota-Velasco, ...
BMC genomics 13 (1), 244, 2012
1132012
Genome wide association and genomic prediction for growth traits in juvenile farmed Atlantic salmon using a high density SNP array
HY Tsai, A Hamilton, AE Tinch, DR Guy, K Gharbi, MJ Stear, O Matika, ...
BMC genomics 16 (1), 969, 2015
1012015
Mapping the sex determination locus in the Atlantic halibut (Hippoglossus hippoglossus) using RAD sequencing
C Palaiokostas, M Bekaert, A Davie, ME Cowan, M Oral, JB Taggart, ...
BMC genomics 14 (1), 566, 2013
992013
Gene mapping in fishes: a means to an end
RG Danzmann, K Gharbi
Genetica 111 (1-3), 3-23, 2001
992001
poRe: an R package for the visualization and analysis of nanopore sequencing data
M Watson, M Thomson, J Risse, R Talbot, J Santoyo-Lopez, K Gharbi, ...
Bioinformatics 31 (1), 114-115, 2014
852014
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Articles 1–20