Charlotte Soneson
Charlotte Soneson
Research Associate, FMI, Basel
Verified email at fmi.ch - Homepage
TitleCited byYear
The consensus molecular subtypes of colorectal cancer
J Guinney, R Dienstmann, X Wang, A De Reyniès, A Schlicker, ...
Nature medicine 21 (11), 1350, 2015
11692015
A comparison of methods for differential expression analysis of RNA-seq data
C Soneson, M Delorenzi
BMC bioinformatics 14 (1), 91, 2013
6452013
Differential analyses for RNA-seq: transcript-level estimates improve gene-level inferences
C Soneson, MI Love, MD Robinson
F1000Research 4, 2015
3612015
Distal and proximal colon cancers differ in terms of molecular, pathological, and clinical features
E Missiaglia, B Jacobs, G D'ario, AF Di Narzo, C Soneson, E Budinska, ...
Annals of oncology 25 (10), 1995-2001, 2014
2502014
Long-lasting stem cell–like memory CD8+ T cells with a naïve-like profile upon yellow fever vaccination
SAF Marraco, C Soneson, L Cagnon, PO Gannon, M Allard, SA Maillard, ...
Science translational medicine 7 (282), 282ra48-282ra48, 2015
782015
Serum neurofilament light chain in early relapsing remitting MS is increased and correlates with CSF levels and with MRI measures of disease severity
J Kuhle, C Barro, G Disanto, A Mathias, C Soneson, G Bonnier, Ö Yaldizli, ...
Multiple Sclerosis Journal 22 (12), 1550-1559, 2016
742016
Bias, robustness and scalability in single-cell differential expression analysis
C Soneson, MD Robinson
Nature methods 15 (4), 255, 2018
642018
Early changes in the hypothalamic region in prodromal Huntington disease revealed by MRI analysis
C Soneson, M Fontes, Y Zhou, V Denisov, JS Paulsen, D Kirik, Å Petersén, ...
Neurobiology of disease 40 (3), 531-543, 2010
642010
Colorectal Cancer Subtyping Consortium (CRCSC) identification of a consensus of molecular subtypes.
R Dienstmann, J Guinney, M Delorenzi, A De Reynies, P Roepman, ...
Journal of Clinical Oncology 32 (15_suppl), 3511-3511, 2014
602014
A glioma classification scheme based on coexpression modules of EGFR and PDGFRA
Y Sun, W Zhang, D Chen, Y Lv, J Zheng, H Lilljebjörn, L Ran, Z Bao, ...
Proceedings of the National Academy of Sciences 111 (9), 3538-3543, 2014
572014
Integrative analysis of gene expression and copy number alterations using canonical correlation analysis
C Soneson, H Lilljebjörn, T Fioretos, M Fontes
BMC bioinformatics 11 (1), 191, 2010
572010
The correlation pattern of acquired copy number changes in 164 ETV6/RUNX1-positive childhood acute lymphoblastic leukemias
H Lilljebjörn, C Soneson, A Andersson, J Heldrup, M Behrendtz, ...
Human molecular genetics 19 (16), 3150-3158, 2010
522010
Mpn1, mutated in poikiloderma with neutropenia protein 1, is a conserved 3′-to-5′ RNA exonuclease processing U6 small nuclear RNA
V Shchepachev, H Wischnewski, E Missiaglia, C Soneson, CM Azzalin
Cell reports 2 (4), 855-865, 2012
492012
Isoform prefiltering improves performance of count-based methods for analysis of differential transcript usage
C Soneson, KL Matthes, M Nowicka, CW Law, MD Robinson
Genome biology 17 (1), 12, 2016
452016
Modulation of mTOR signalling triggers the formation of stem cell-like memory T cells
G Scholz, C Jandus, L Zhang, C Grandclément, IC Lopez-Mejia, ...
EBioMedicine 4, 50-61, 2016
342016
compcodeR—an R package for benchmarking differential expression methods for RNA-seq data
C Soneson
Bioinformatics 30 (17), 2517-2518, 2014
222014
Proximal and distal colon tumors as distinct biologic entities with different prognoses.
E Missiaglia, B Jacobs, AF Di Narzo, C Soneson, A Roth, F Bosman, ...
Journal of Clinical Oncology 31 (15_suppl), 3526-3526, 2013
222013
Batch effect confounding leads to strong bias in performance estimates obtained by cross-validation
C Soneson, S Gerster, M Delorenzi
PloS one 9 (6), e100335, 2014
202014
iCOBRA: open, reproducible, standardized and live method benchmarking
C Soneson, MD Robinson
Nature Methods 13 (4), 283, 2016
182016
The ABCs of viral hepatitis that define biomarker signatures of acute viral hepatitis
D Duffy, R Mamdouh, M Laird, C Soneson, L Le Fouler, M El‐Daly, ...
Hepatology 59 (4), 1273-1282, 2014
182014
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