Siu Hung Joshua Chan
Siu Hung Joshua Chan
Verified email at colostate.edu
TitleCited byYear
Creation and analysis of biochemical constraint-based models: the COBRA Toolbox v3. 0
L Heirendt, S Arreckx, T Pfau, SN Mendoza, A Richelle, A Heinken, ...
arXiv preprint arXiv:1710.04038, 2017
572017
SteadyCom: Predicting microbial abundances while ensuring community stability
SHJ Chan, MN Simons, CD Maranas
PLoS computational biology 13 (5), e1005539, 2017
362017
Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v. 3.0
L Heirendt, S Arreckx, T Pfau, SN Mendoza, A Richelle, A Heinken, ...
Nature protocols 14 (3), 639, 2019
342019
Farnesoid X Receptor Signaling Shapes the Gut Microbiota and Controls Hepatic Lipid Metabolism
L Zhang, C Xie, RG Nichols, SHJ Chan, C Jiang, R Hao, PB Smith, J Cai, ...
mSystems 1 (5), e00070-16, 2016
342016
Combining metabolic engineering and biocompatible chemistry for high-yield production of homo-diacetyl and homo-(S, S)-2, 3-butanediol
J Liu, SHJ Chan, T Brock-Nannestad, J Chen, SY Lee, C Solem, ...
Metabolic engineering 36, 57-67, 2016
302016
Decomposing flux distributions into elementary flux modes in genome-scale metabolic networks
SHJ Chan, P Ji
Bioinformatics 27 (16), 2256-2262, 2011
302011
1-D constitutive model for evolution of stress-induced R-phase and localized Lüders-like stress-induced martensitic transformation of super-elastic NiTi wires
CW Chan, SHJ Chan, HC Man, P Ji
International Journal of Plasticity 32, 85-105, 2012
232012
Standardizing biomass reactions and ensuring complete mass balance in genome-scale metabolic models
SHJ Chan, J Cai, L Wang, MN Simons-Senftle, CD Maranas
Bioinformatics 33 (22), 3603-3609, 2017
222017
Elucidation of the regulatory role of the fructose operon reveals a novel target for enhancing the NADPH supply in Corynebacterium glutamicum
Z Wang, SHJ Chan, S Sudarsan, LM Blank, PR Jensen, C Solem
Metabolic engineering 38, 344-357, 2016
122016
Acetate kinase isozymes confer robustness in acetate metabolism
SHJ Chan, L Nørregaard, C Solem, PR Jensen
PLoS One 9 (3), e92256, 2014
112014
Re-wiring of energy metabolism promotes viability during hyperreplication stress in E. coli
G Charbon, C Campion, SHJ Chan, L Bjørn, A Weimann, LCN da Silva, ...
PLoS genetics 13 (1), e1006590, 2017
102017
Constitutive model for localized Lüders-like stress-induced martensitic transformation and super-elastic behaviors of laser-welded NiTi wires
CW Chan, SHJ Chan, HC Man, P Ji
Computational materials science 63, 197-206, 2012
72012
Estimating biological elementary flux modes that decompose a flux distribution by the minimal branching property
SHJ Chan, C Solem, PR Jensen, P Ji
Bioinformatics 30 (22), 3232-3239, 2014
52014
Accelerating flux balance calculations in genome-scale metabolic models by localizing the application of loopless constraints
SHJ Chan, L Wang, S Dash, CD Maranas
Bioinformatics 34 (24), 4248-4255, 2018
42018
Computational modeling of microbial communities
SHJ Chan, M Simons, CD Maranas
Systems Biology, 163-189, 2017
42017
Thermodynamic analysis of the pathway for ethanol production from cellobiose in Clostridium thermocellum.
S Dash, DG Olson, SHJ Chan, D Amador-Noguez, LR Lynd, CD Maranas
Metabolic engineering, 2019
12019
Systems Biology–A Guide for Understanding and Developing Improved Strains of Lactic Acid Bacteria
J Liu, SHJ Chan, J Chen, C Solem, PR Jensen
Frontiers in microbiology 10, 2019
12019
Can microbes compete with cows for sustainable protein production-A feasibility study on high quality protein
M Vestergaard, SHJ Chan, PR Jensen
Scientific reports 6, 36421, 2016
12016
Elucidating Flux Regulation of the Fermentation Modes of Lactococcus lactis: A Mutlilevel Study
SHJ Chan, C Solem, PR Jensen
Ph. D. thesis, Technical University of Denmark, Kongens Lyngby, 167. doi: 10 …, 2014
12014
A decomposition approach for computing elementary flux modes in genome-scale metabolic networks
SJ Chan
The Hong Kong Polytechnic University, 2011
12011
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Articles 1–20