Ina Koch

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Citations	17811	7760
h-index	39	24
i10-index	86	54

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Jörg AckermannGoethe-Universität FrankfurtVerified email at bioinformatik.uni-frankfurt.de
Monika HeinerProfessor of Computer Science, Brandenburg Technical University (BTU)Verified email at b-tu.de
Stefan SchusterProfessor of Bioinformatics, Jena UniversityVerified email at uni-jena.de
Peer BorkDirector of EMBL HeidelbergVerified email at embl.de
Shamil SunyaevProfessor of Biomedical Informatics and of Medicine (BWH), Harvard Medical SchoolVerified email at rics.bwh.harvard.edu
Tim SchäferGoethe University Frankfurt am Main, GermanyVerified email at med.uni-frankfurt.de
Sören MüllerGenentechVerified email at gene.com
Patrick MayGenome Analysis, Bioinformatics Core, Luxembourg Centre for Systems BiomedicineVerified email at uni.lu
Dr. Jennifer Hannig (née Scheidel)Postdoc, Cognitive Information Systems, KITE - Kompetenzzentrum für InformationstechnologieVerified email at kite.thm.de
Simon BernatzResearch Fellow @ AI in Medicine (AIM) @ Harvard-MGB | Radiology Resident @ Goethe UniversityVerified email at bwh.harvard.edu
Vasily RamenskyNational Medical Research Center for Preventive Medicine, Moscow, RussiaVerified email at gnicpm.ru
Warren (Trey) LatheOpenHelixVerified email at openhelix.com
Falk SchreiberProfessor, University of Konstanz and Monash UniversityVerified email at uni-konstanz.de
Fabian J TheisHelmholtz Munich, Technical University of MunichVerified email at helmholtz-muenchen.de
Thomas SteinkeZuse Institute BerlinVerified email at zib.de
Thomas PfeifferNZ Institute for Advanced Study, Massey UniversityVerified email at massey.ac.nz
Thomas DandekarProfessor, Julius Maximilian University of Würzburg, GermanyVerified email at uni-wuerzburg.de
Evgenia V. KriventsevaUniversity of Geneva, Swiss Institute of BioinformaticsVerified email at unige.ch
Martin VingronMax-Planck-Institut für molekulare GenetikVerified email at molgen.mpg.de
Ivan DikicProfessor of Biochemistry, Goethe University Medical SchoolVerified email at biochem2.uni-frankfurt.de

Ina Koch

Professor of Bioinformatics, Goethe University Frankfurt am Main

Verified email at bioinformatik.uni-frankfurt.de - Homepage

Bioinformatics Computational Biology Systems Biology Petri nets Graph Theory


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Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)¹ DJ Klionsky, AK Abdel-Aziz, S Abdelfatah, M Abdellatif, A Abdoli, S Abel, ... autophagy 17 (1), 1-382, 2021	10662	2021
Prediction of deleterious human alleles S Sunyaev, V Ramensky, I Koch, W Lathe III, AS Kondrashov, P Bork Human molecular genetics 10 (6), 591-597, 2001	1293	2001
Enumerating all connected maximal common subgraphs in two graphs I Koch Theoretical Computer Science 250 (1-2), 1-30, 2001	325	2001
Exploring the pathway structure of metabolism: decomposition into subnetworks and application to Mycoplasma pneumoniae S Schuster, T Pfeiffer, F Moldenhauer, I Koch, T Dandekar Bioinformatics 18 (2), 351-361, 2002	290	2002
Complexome profiling identifies TMEM126B as a component of the mitochondrial complex I assembly complex H Heide, L Bleier, M Steger, J Ackermann, S Dröse, B Schwamb, M Zörnig, ... Cell metabolism 16 (4), 538-549, 2012	285	2012
Increase of functional diversity by alternative splicing EV Kriventseva, I Koch, R Apweiler, M Vingron, P Bork, MS Gelfand, ... Trends in Genetics 19 (3), 124-128, 2003	285	2003
Next-generation sequencing reveals novel differentially regulated mRNAs, lncRNAs, miRNAs, sdRNAs and a piRNA in pancreatic cancer S Müller, S Raulefs, P Bruns, F Afonso-Grunz, A Plötner, R Thermann, ... Molecular cancer 14, 1-18, 2015	280	2015
Application of Petri net based analysis techniques to signal transduction pathways A Sackmann, M Heiner, I Koch BMC bioinformatics 7, 1-17, 2006	267	2006
Model validation of biological pathways using Petri nets—demonstrated for apoptosis M Heiner, I Koch, J Will Biosystems 75 (1-3), 15-28, 2004	207	2004
Application of Petri net theory for modelling and validation of the sucrose breakdown pathway in the potato tuber I Koch, BH Junker, M Heiner Bioinformatics 21 (7), 1219-1226, 2005	198	2005
Modeling in systems biology: the Petri net approach I Koch, W Reisig, F Schreiber Springer science & business media, 2010	197	2010
An algorithm for finding maximal common subtopologies in a set of protein structures I Koch, T Lengauer, E Wanke Journal of computational biology 3 (2), 289-306, 1996	174	1996
Steady state analysis of metabolic pathways using Petri nets K Voss, M Heiner, I Koch In silico biology 3 (3), 367-387, 2003	154	2003
Preclinical validation and imaging of Wnt-induced repair in human 3D lung tissue cultures FE Uhl, S Vierkotten, DE Wagner, G Burgstaller, R Costa, I Koch, ... European Respiratory Journal 46 (4), 1150-1166, 2015	152	2015
Petri net based model validation in systems biology M Heiner, I Koch International Conference on Application and Theory of Petri Nets, 216-237, 2004	146	2004
ADAM17 regulates epidermal growth factor receptor expression through the activation of Notch1 in non–small cell lung cancer A Baumgart, S Seidl, P Vlachou, L Michel, N Mitova, N Schatz, K Specht, ... Cancer research 70 (13), 5368-5378, 2010	120	2010
Gli1 mediates lung cancer cell proliferation and Sonic Hedgehog-dependent mesenchymal cell activation O Bermudez, E Hennen, I Koch, M Lindner, O Eickelberg PloS one 8 (5), e63226, 2013	115	2013
Modularization of biochemical networks based on classification of Petri net t-invariants E Grafahrend-Belau, F Schreiber, M Heiner, A Sackmann, BH Junker, ... BMC bioinformatics 9, 1-17, 2008	105	2008
APADB: a database for alternative polyadenylation and microRNA regulation events S Müller, L Rycak, F Afonso-Grunz, P Winter, AM Zawada, E Damrath, ... Database 2014, bau076, 2014	104	2014
Petri net modelling of gene regulation of the Duchenne muscular dystrophy S Grunwald, A Speer, J Ackermann, I Koch Biosystems 92 (2), 189-205, 2008	104	2008

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