Kostas Konstantinidis
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DNA–DNA hybridization values and their relationship to whole-genome sequence similarities
J Goris, KT Konstantinidis, JA Klappenbach, T Coenye, P Vandamme, ...
International journal of systematic and evolutionary microbiology 57 (1), 81-91, 2007
High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries
C Jain, LM Rodriguez-R, AM Phillippy, KT Konstantinidis, S Aluru
Nature communications 9 (1), 5114, 2018
Genomic insights that advance the species definition for prokaryotes
KT Konstantinidis, JM Tiedje
Proceedings of the National Academy of Sciences 102 (7), 2567-2572, 2005
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
RM Bowers, NC Kyrpides, R Stepanauskas, M Harmon-Smith, D Doud, ...
Nature biotechnology 35 (8), 725-731, 2017
The enveomics collection: a toolbox for specialized analyses of microbial genomes and metagenomes
LM Rodriguez-R, KT Konstantinidis
PeerJ Preprints, 2016
Towards a genome-based taxonomy for prokaryotes
KT Konstantinidis, JM Tiedje
Journal of bacteriology 187 (18), 6258-6264, 2005
The bacterial species definition in the genomic era
KT Konstantinidis, A Ramette, JM Tiedje
Philosophical Transactions of the Royal Society B: Biological Sciences 361 …, 2006
Strengths and limitations of 16S rRNA gene amplicon sequencing in revealing temporal microbial community dynamics
R Poretsky, LM Rodriguez-R, C Luo, D Tsementzi, KT Konstantinidis
PloS one 9 (4), e93827, 2014
Bypassing cultivation to identify bacterial species
LM Rodriguez-R, KT Konstantinidis
Microbe 9 (3), 111-118, 2014
Microbial species delineation using whole genome sequences
NJ Varghese, S Mukherjee, N Ivanova, KT Konstantinidis, K Mavrommatis, ...
Nucleic acids research 43 (14), 6761-6771, 2015
Direct comparisons of Illumina vs. Roche 454 sequencing technologies on the same microbial community DNA sample
C Luo, D Tsementzi, N Kyrpides, T Read, KT Konstantinidis
PloS one 7 (2), e30087, 2012
Unexpected nondenitrifier nitrous oxide reductase gene diversity and abundance in soils
RA Sanford, DD Wagner, Q Wu, JC Chee-Sanford, SH Thomas, ...
Proceedings of the National Academy of Sciences 109 (48), 19709-19714, 2012
Dehalococcoides mccartyi gen. nov., sp. nov., obligately organohalide-respiring anaerobic bacteria relevant to halogen cycling and bioremediation, belong to a novel bacterial …
FE Löffler, J Yan, KM Ritalahti, L Adrian, EA Edwards, KT Konstantinidis, ...
International journal of systematic and evolutionary microbiology 63 (Pt_2 …, 2013
Uncultivated microbes in need of their own taxonomy
KT Konstantinidis, R Rosselló-Móra, R Amann
The ISME journal 11 (11), 2399-2406, 2017
Trends between gene content and genome size in prokaryotic species with larger genomes
KT Konstantinidis, JM Tiedje
Proceedings of the National Academy of Sciences 101 (9), 3160-3165, 2004
Genomic analysis of the uncultivated marine crenarchaeote Cenarchaeum symbiosum
SJ Hallam, KT Konstantinidis, N Putnam, C Schleper, Y Watanabe, ...
Proceedings of the National Academy of Sciences 103 (48), 18296-18301, 2006
Microbiome of the upper troposphere: species composition and prevalence, effects of tropical storms, and atmospheric implications
N DeLeon-Rodriguez, TL Lathem, LM Rodriguez-R, JM Barazesh, ...
Proceedings of the National Academy of Sciences 110 (7), 2575-2580, 2013
MyTaxa: an advanced taxonomic classifier for genomic and metagenomic sequences
C Luo, LM Rodriguez-r, KT Konstantinidis
Nucleic acids research 42 (8), e73-e73, 2014
T Ezaki
Bergey's Manual of Systematics of Archaea and Bacteria, 1-3, 2015
The Microbial Genomes Atlas (MiGA) webserver: taxonomic and gene diversity analysis of Archaea and Bacteria at the whole genome level
LM Rodriguez-R, S Gunturu, WT Harvey, R Rosselló-Mora, JM Tiedje, ...
Nucleic acids research 46 (W1), W282-W288, 2018
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