Vladimir B. Teif
Title
Cited by
Cited by
Year
Genome-wide nucleosome positioning during embryonic stem cell development
VB Teif, Y Vainshtein, M Caudron-Herger, JP Mallm, C Marth, T Höfer, ...
Nature structural & molecular biology 19 (11), 1185-1192, 2012
2172012
Condensed DNA: condensing the concepts
VB Teif, K Bohinc
Progress in biophysics and molecular biology 105 (3), 208-222, 2011
2112011
Predicting nucleosome positions on the DNA: combining intrinsic sequence preferences and remodeler activities
VB Teif, K Rippe
Nucleic acids research 37 (17), 5641-5655, 2009
1112009
Nucleosome repositioning links DNA (de) methylation and differential CTCF binding during stem cell development
VB Teif, DA Beshnova, Y Vainshtein, C Marth, JP Mallm, T Höfer, K Rippe
Genome research 24 (8), 1285-1295, 2014
1042014
Regulation of the nucleosome repeat length in vivo by the DNA sequence, protein concentrations and long-range interactions
DA Beshnova, AG Cherstvy, Y Vainshtein, VB Teif
PLoS Computational Biology 10 (7), e1003698, 2014
712014
Ligand-induced DNA condensation: choosing the model
VB Teif
Biophysical journal 89 (4), 2574-2587, 2005
642005
Statistical–mechanical lattice models for protein–DNA binding in chromatin
VB Teif, K Rippe
Journal of Physics: Condensed Matter 22 (41), 414105, 2010
582010
General transfer matrix formalism to calculate DNA–protein–drug binding in gene regulation: application to O R operator of phage λ
VB Teif
Nucleic acids research 35 (11), e80, 2007
552007
Nucleosome positioning: resources and tools online
VB Teif
Briefings in bioinformatics 17 (5), 745-757, 2016
422016
Modeling nucleosome position distributions from experimental nucleosome positioning maps
R Schöpflin, VB Teif, O Müller, C Weinberg, K Rippe, G Wedemann
Bioinformatics 29 (19), 2380-2386, 2013
352013
A lattice model for transcription factor access to nucleosomal DNA
VB Teif, R Ettig, K Rippe
Biophysical journal 99 (8), 2597-2607, 2010
342010
Calculating transcription factor binding maps for chromatin
VB Teif, K Rippe
Briefings in bioinformatics 13 (2), 187-201, 2012
292012
Nucleosome mediated crosstalk between transcription factors at eukaryotic enhancers
VB Teif, K Rippe
Physical biology 8 (4), 044001, 2011
292011
Taking into account nucleosomes for predicting gene expression
VB Teif, F Erdel, DA Beshnova, Y Vainshtein, JP Mallm, K Rippe
Methods 62 (1), 26-38, 2013
272013
Predicting gene-regulation functions: lessons from temperate bacteriophages
VB Teif
Biophysical journal 98 (7), 1247-1256, 2010
272010
DNA (de) methylation in embryonic stem cells controls CTCF-dependent chromatin boundaries
L Wiehle, GJ Thorn, G Raddatz, CT Clarkson, K Rippe, F Lyko, A Breiling, ...
Genome research 29 (5), 750-761, 2019
262019
Long-range interactions between ligands bound to a DNA molecule give rise to adsorption with the character of phase transition of the first kind
DY Lando, VB Teif
Journal of Biomolecular Structure and Dynamics 17 (5), 903-911, 2000
252000
Electrostatic effect of H1-histone protein binding on nucleosome repeat length
AG Cherstvy, VB Teif
Physical biology 11 (4), 044001, 2014
242014
NucTools: analysis of chromatin feature occupancy profiles from high-throughput sequencing data
Y Vainshtein, K Rippe, VB Teif
BMC genomics 18 (1), 158, 2017
232017
Structure-driven homology pairing of chromatin fibers: the role of electrostatics and protein-induced bridging
AG Cherstvy, VB Teif
Journal of biological physics 39 (3), 363-385, 2013
212013
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