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Rachel Colquhoun
Rachel Colquhoun
Verified email at ed.ac.uk
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Year
Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa
R Viana, S Moyo, DG Amoako, H Tegally, C Scheepers, CL Althaus, ...
Nature 603 (7902), 679-686, 2022
14172022
Evaluating the effects of SARS-CoV-2 spike mutation D614G on transmissibility and pathogenicity
E Volz, V Hill, JT McCrone, A Price, D Jorgensen, Á O’Toole, J Southgate, ...
Cell 184 (1), 64-75. e11, 2021
10732021
Assignment of epidemiological lineages in an emerging pandemic using the pangolin tool
Á O’Toole, E Scher, A Underwood, B Jackson, V Hill, JT McCrone, ...
Virus evolution 7 (2), veab064, 2021
8672021
Circulating SARS-CoV-2 spike N439K variants maintain fitness while evading antibody-mediated immunity
EC Thomson, LE Rosen, JG Shepherd, R Spreafico, A da Silva Filipe, ...
Cell 184 (5), 1171-1187. e20, 2021
5572021
Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK
L Du Plessis, JT McCrone, AE Zarebski, V Hill, C Ruis, B Gutierrez, ...
Science 371 (6530), 708-712, 2021
3682021
Generation and transmission of interlineage recombinants in the SARS-CoV-2 pandemic
B Jackson, MF Boni, MJ Bull, A Colleran, RM Colquhoun, AC Darby, ...
Cell 184 (20), 5179-5188. e8, 2021
2062021
Spatiotemporal invasion dynamics of SARS-CoV-2 lineage B. 1.1. 7 emergence
MUG Kraemer, V Hill, C Ruis, S Dellicour, S Bajaj, JT McCrone, G Baele, ...
Science 373 (6557), 889-895, 2021
1462021
The circulating SARS-CoV-2 spike variant N439K maintains fitness while evading antibody-mediated immunity
EC Thomson, LE Rosen, JG Shepherd, R Spreafico, A da Silva Filipe, ...
BioRxiv, 2020.11. 04.355842, 2020
1082020
The origins and molecular evolution of SARS-CoV-2 lineage B. 1.1. 7 in the UK
V Hill, L Du Plessis, TP Peacock, D Aggarwal, R Colquhoun, AM Carabelli, ...
Virus Evolution 8 (2), veac080, 2022
912022
Assignment of epidemiological lineages in an emerging pandemic using the pangolin tool. Virus Evol 7: veab064
Á O’Toole, E Scher, A Underwood, B Jackson, V Hill, JT McCrone, ...
832021
Kosakovsky Pond SL
R Viana, S Moyo, DG Amoako, H Tegally, C Scheepers, CL Althaus, ...
Kraemer MUG, Kuate-Lere L, Laguda-Akingba O, Lesetedi-Mafoko O, Lessells RJ …, 2022
772022
Context-specific emergence and growth of the SARS-CoV-2 Delta variant
JT McCrone, V Hill, S Bajaj, RE Pena, BC Lambert, R Inward, S Bhatt, ...
Nature 610 (7930), 154-160, 2022
732022
CLIMB-COVID: continuous integration supporting decentralised sequencing for SARS-CoV-2 genomic surveillance
SM Nicholls, R Poplawski, MJ Bull, A Underwood, M Chapman, ...
Genome biology 22, 1-21, 2021
682021
The impact of viral mutations on recognition by SARS-CoV-2 specific T cells
TI de Silva, G Liu, BB Lindsey, D Dong, SC Moore, NS Hsu, D Shah, ...
Iscience 24 (11), 2021
622021
Preliminary analysis of SARS-CoV-2 importation & establishment of UK transmission lineages
O Pybus, A Rambaut, COG-UK-Consortium
Virological. org.[Google Scholar], 2020
492020
Pandora: nucleotide-resolution bacterial pan-genomics with reference graphs
RM Colquhoun, MB Hall, L Lima, LW Roberts, KM Malone, M Hunt, ...
Genome biology 22, 1-30, 2021
362021
Tracking SARS-CoV-2 mutations and variants through the COG-UK-Mutation Explorer
DW Wright, WT Harvey, J Hughes, MG Cox, TP Peacock, R Colquhoun, ...
Virus evolution 8 (1), veac023, 2022
262022
Consortium CU, Goodfellow I, Loman NJ, Pybus OG, Robertson DL, Thomson EC, Rambaut A
E Volz, V Hill, JT McCrone, A Price, D Jorgensen, A O'Toole, J Southgate, ...
Connor TR, COG-UK Consortium. 2021. Evaluating the effects of SARS-CoV-2 …, 2021
202021
Minos: variant adjudication and joint genotyping of cohorts of bacterial genomes
M Hunt, B Letcher, KM Malone, G Nguyen, MB Hall, RM Colquhoun, ...
Genome Biology 23 (1), 147, 2022
162022
Genomic assessment of invasion dynamics of SARS-CoV-2 Omicron BA. 1
JLH Tsui, JT McCrone, B Lambert, S Bajaj, RPD Inward, P Bosetti, ...
Science 381 (6655), 336-343, 2023
142023
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