| Transcriptome profiling in human diseases: new advances and perspectives A Casamassimi, A Federico, M Rienzo, S Esposito, A Ciccodicola International journal of molecular sciences 18 (8), 1652, 2017 | 243 | 2017 |
| Transcriptomics in toxicogenomics, part I: experimental design, technologies, publicly available data, and regulatory aspects PAS Kinaret, A Serra, A Federico, P Kohonen, P Nymark, I Liampa, MK Ha, ... Nanomaterials 10 (4), 750, 2020 | 50 | 2020 |
| Transcriptomics in toxicogenomics, part III: data modelling for risk assessment A Serra, M Fratello, L Cattelani, I Liampa, G Melagraki, P Kohonen, ... Nanomaterials 10 (4), 708, 2020 | 47 | 2020 |
| Pan-cancer mutational and transcriptional analysis of the integrator complex A Federico, M Rienzo, C Abbondanza, V Costa, A Ciccodicola, ... International journal of molecular sciences 18 (5), 936, 2017 | 44 | 2017 |
| Inhibition of histone demethylases LSD1 and UTX regulates ERα signaling in breast cancer R Benedetti, C Dell’Aversana, T De Marchi, D Rotili, NQ Liu, B Novakovic, ... Cancers 11 (12), 2027, 2019 | 43 | 2019 |
| Carbon nanomaterials promote M1/M2 macrophage activation PAS Kinaret, G Scala, A Federico, J Sund, D Greco Small 16 (21), 1907609, 2020 | 42 | 2020 |
| PR/SET Domain Family and Cancer: Novel Insights from the Cancer Genome Atlas A Sorrentino, A Federico, M Rienzo, P Gazzerro, M Bifulco, A Ciccodicola, ... International Journal of Molecular Sciences 19, 3250, 2018 | 41 | 2018 |
| Transcriptomics in toxicogenomics, part II: preprocessing and differential expression analysis for high quality data A Federico, A Serra, MK Ha, P Kohonen, JS Choi, I Liampa, P Nymark, ... Nanomaterials 10 (5), 903, 2020 | 40 | 2020 |
| Wide-Ranging Analysis of MicroRNA Profiles in Sporadic Amyotrophic Lateral Sclerosis Using Next-Generation Sequencing B De Felice, F Manfellotto, G Fiorentino, A Annunziata, E Biffali, ... Frontiers in Genetics 9, 310, 2018 | 33 | 2018 |
| Integrated network analysis reveals new genes suggesting COVID-19 chronic effects and treatment A Pavel, G Del Giudice, A Federico, A Di Lieto, PAS Kinaret, A Serra, ... Briefings in bioinformatics 22 (2), 1430-1441, 2021 | 29 | 2021 |
| Manually curated transcriptomics data collection for toxicogenomic assessment of engineered nanomaterials LA Saarimäki, A Federico, I Lynch, AG Papadiamantis, A Tsoumanis, ... Scientific data 8 (1), 49, 2021 | 24 | 2021 |
| Computationally prioritized drugs inhibit SARS-CoV-2 infection and syncytia formation A Serra, M Fratello, A Federico, R Ojha, R Provenzani, E Tasnadi, ... Briefings in bioinformatics 23 (1), bbab507, 2022 | 21 | 2022 |
| DNA sequence context as a marker of CpG methylation instability in normal and cancer tissues DG Giovanni Scala, Antonio Federico, Domenico Palumbo, Sergio Cocozza Scientific reports 10(1), 2020 | 20* | 2020 |
| Toxicogenomics analysis of dynamic dose-response in macrophages highlights molecular alterations relevant for multi-walled carbon nanotube-induced lung fibrosis LA Saarimäki, PAS Kinaret, G Scala, G del Giudice, A Federico, A Serra, ... NanoImpact 20, 100274, 2020 | 18 | 2020 |
| TinderMIX: Time-dose integrated modelling of toxicogenomics data A Serra, M Fratello, G Del Giudice, LA Saarimäki, M Paci, A Federico, ... Gigascience 9 (5), giaa055, 2020 | 18 | 2020 |
| Computational analysis of single nucleotide polymorphisms associated with altered drug responsiveness in type 2 diabetes V Costa, A Federico, C Pollastro, C Ziviello, S Cataldi, P Formisano, ... International Journal of Molecular Sciences 17 (7), 1008, 2016 | 14 | 2016 |
| An ancestral molecular response to nanomaterial particulates G Del Giudice, A Serra, LA Saarimäki, K Kotsis, I Rouse, SA Colibaba, ... Nature Nanotechnology 18 (8), 957-966, 2023 | 12 | 2023 |
| Integrated network pharmacology approach for drug combination discovery: a multi-cancer case study A Federico, M Fratello, G Scala, L Möbus, A Pavel, G Del Giudice, ... Cancers 14 (8), 2043, 2022 | 12 | 2022 |
| Knowledge generation with rule induction in cancer omics G Scala, A Federico, V Fortino, D Greco, B Majello International journal of molecular sciences 21 (1), 18, 2019 | 12 | 2019 |
| SFMetaDB: a comprehensive annotation of mouse RNA splicing factor RNA-Seq datasets J Li, CS Tseng, A Federico, F Ivankovic, YS Huang, A Ciccodicola, ... Database 2017, bax071, 2017 | 12 | 2017 |
Dario GrecoFHAIVE, Faculty of Medicine and Health Technology, Tampere UniveristyVerified email at tuni.fi
