| A promoter-level mammalian expression atlas Nature 507 (7493), 462-470, 2014 | 1780 | 2014 |
| Assessing computational tools for the discovery of transcription factor binding sites M Tompa, N Li, TL Bailey, GM Church, B De Moor, E Eskin, AV Favorov, ... Nature biotechnology 23 (1), 137-144, 2005 | 1621 | 2005 |
| HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis IV Kulakovskiy, IE Vorontsov, IS Yevshin, RN Sharipov, AD Fedorova, ... Nucleic acids research 46 (D1), D252-D259, 2018 | 836 | 2018 |
| An integrated expression atlas of miRNAs and their promoters in human and mouse D De Rie, I Abugessaisa, T Alam, E Arner, P Arner, H Ashoor, G Ĺström, ... Nature biotechnology 35 (9), 872-878, 2017 | 602 | 2017 |
| HOCOMOCO: a comprehensive collection of human transcription factor binding sites models IV Kulakovskiy, YA Medvedeva, U Schaefer, AS Kasianov, IE Vorontsov, ... Nucleic acids research 41 (D1), D195-D202, 2013 | 292 | 2013 |
| HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models IV Kulakovskiy, IE Vorontsov, IS Yevshin, AV Soboleva, AS Kasianov, ... Nucleic acids research 44 (D1), D116-D125, 2016 | 267 | 2016 |
| Homotypic regulatory clusters in Drosophila AP Lifanov, VJ Makeev, AG Nazina, DA Papatsenko Genome research 13 (4), 579-588, 2003 | 212 | 2003 |
| Identification of proteins associated with murine cytomegalovirus virions LM Kattenhorn, R Mills, M Wagner, A Lomsadze, V Makeev, ... Journal of virology 78 (20), 11187-11197, 2004 | 210 | 2004 |
| Exploring massive, genome scale datasets with the GenometriCorr package A Favorov, L Mularoni, LM Cope, Y Medvedeva, AA Mironov, VJ Makeev, ... PLoS computational biology 8 (5), e1002529, 2012 | 198 | 2012 |
| GTRD: an integrated view of transcription regulation S Kolmykov, I Yevshin, M Kulyashov, R Sharipov, Y Kondrakhin, ... Nucleic acids research 49 (D1), D104-D111, 2021 | 197 | 2021 |
| Deep and wide digging for binding motifs in ChIP-Seq data IV Kulakovskiy, VA Boeva, AV Favorov, VJ Makeev Bioinformatics 26 (20), 2622-2623, 2010 | 188 | 2010 |
| De novo sequencing and characterization of floral transcriptome in two species of buckwheat (Fagopyrum) MD Logacheva, AS Kasianov, DV Vinogradov, TH Samigullin, ... BMC genomics 12, 1-17, 2011 | 166 | 2011 |
| A Gibbs sampler for identification of symmetrically structured, spaced DNA motifs with improved estimation of the signal length AV Favorov, MS Gelfand, AV Gerasimova, DA Ravcheev, AA Mironov, ... Bioinformatics 21 (10), 2240-2245, 2005 | 162 | 2005 |
| Functional annotation of human long noncoding RNAs via molecular phenotyping JA Ramilowski, CW Yip, S Agrawal, JC Chang, Y Ciani, IV Kulakovskiy, ... Genome research 30 (7), 1060-1072, 2020 | 152 | 2020 |
| A novel model system for design of biomaterials based on recombinant analogs of spider silk proteins VG Bogush, OS Sokolova, LI Davydova, DV Klinov, KV Sidoruk, ... Journal of neuroimmune pharmacology 4, 17-27, 2009 | 126 | 2009 |
| Short fuzzy tandem repeats in genomic sequences, identification, and possible role in regulation of gene expression V Boeva, M Regnier, D Papatsenko, V Makeev Bioinformatics 22 (6), 676-684, 2006 | 118 | 2006 |
| Distance preferences in the arrangement of binding motifs and hierarchical levels in organization of transcription regulatory information VJ Makeev, AP Lifanov, AG Nazina, DA Papatsenko Nucleic acids research 31 (20), 6016-6026, 2003 | 116 | 2003 |
| Extraction of functional binding sites from unique regulatory regions: the Drosophila early developmental enhancers DA Papatsenko, VJ Makeev, AP Lifanov, M Régnier, AG Nazina, ... Genome research 12 (3), 470-481, 2002 | 115 | 2002 |
| Intergenic, gene terminal, and intragenic CpG islands in the human genome YA Medvedeva, MV Fridman, NJ Oparina, DB Malko, EO Ermakova, ... BMC genomics 11, 1-16, 2010 | 113 | 2010 |
| Jaccard index based similarity measure to compare transcription factor binding site models IE Vorontsov, IV Kulakovskiy, VJ Makeev Algorithms for Molecular Biology 8, 1-11, 2013 | 90 | 2013 |
Ivan KulakovskiyInstitute of Protein Research RASVerified email at vigg.ru
