X C Morgan
X C Morgan
Verified email at otago.ac.nz
TitleCited byYear
The treatment-naive microbiome in new-onset Crohn’s disease
D Gevers, S Kugathasan, LA Denson, Y Vázquez-Baeza, W Van Treuren, ...
Cell host & microbe 15 (3), 382-392, 2014
14382014
Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment
XC Morgan, TL Tickle, H Sokol, D Gevers, KL Devaney, DV Ward, ...
Genome biology 13 (9), R79, 2012
13592012
PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes
N Segata, D Börnigen, XC Morgan, C Huttenhower
Nature communications 4, 2304, 2013
3512013
Sequencing and beyond: integrating molecular'omics' for microbial community profiling
EA Franzosa, T Hsu, A Sirota-Madi, A Shafquat, G Abu-Ali, XC Morgan, ...
Nature Reviews Microbiology 13 (6), 360-372, 2015
3182015
Relating the metatranscriptome and metagenome of the human gut
EA Franzosa, XC Morgan, N Segata, L Waldron, J Reyes, AM Earl, ...
Proceedings of the National Academy of Sciences 111 (22), E2329-E2338, 2014
3162014
Human microbiome analysis
XC Morgan, C Huttenhower
PLoS computational biology 8 (12), e1002808, 2012
3112012
Computational meta'omics for microbial community studies
N Segata, D Boernigen, TL Tickle, XC Morgan, WS Garrett, ...
Molecular systems biology 9 (1), 2013
2392013
Gut microbiome composition and function in experimental colitis during active disease and treatment-induced remission
MG Rooks, P Veiga, LH Wardwell-Scott, T Tickle, N Segata, M Michaud, ...
The ISME journal 8 (7), 1403, 2014
2292014
Biodiversity and functional genomics in the human microbiome
XC Morgan, N Segata, C Huttenhower
Trends in genetics 29 (1), 51-58, 2013
1892013
Mapping DNA-protein interactions in large genomes by sequence tag analysis of genomic enrichment
J Kim, AA Bhinge, XC Morgan, VR Iyer
Nature Methods 2 (1), 47, 2005
1402005
Meta'omic analytic techniques for studying the intestinal microbiome
XC Morgan, C Huttenhower
Gastroenterology 146 (6), 1437-1448. e1, 2014
1362014
Biogeography of the intestinal mucosal and lumenal microbiome in the rhesus macaque
K Yasuda, K Oh, B Ren, TL Tickle, EA Franzosa, LM Wachtman, AD Miller, ...
Cell host & microbe 17 (3), 385-391, 2015
1092015
Extensive unexplored human microbiome diversity revealed by over 150,000 genomes from metagenomes spanning age, geography, and lifestyle
E Pasolli, F Asnicar, S Manara, M Zolfo, N Karcher, F Armanini, F Beghini, ...
Cell 176 (3), 649-662. e20, 2019
1032019
Associations between host gene expression, the mucosal microbiome, and clinical outcome in the pelvic pouch of patients with inflammatory bowel disease
XC Morgan, B Kabakchiev, L Waldron, AD Tyler, TL Tickle, R Milgrom, ...
Genome biology 16 (1), 67, 2015
872015
Sub-clinical detection of gut microbial biomarkers of obesity and type 2 diabetes
M Yassour, MY Lim, HS Yun, TL Tickle, J Sung, YM Song, K Lee, ...
Genome medicine 8 (1), 17, 2016
742016
Determining microbial products and identifying molecular targets in the human microbiome
R Joice, K Yasuda, A Shafquat, XC Morgan, C Huttenhower
Cell Metabolism 20 (5), 731-741, 2014
522014
Functional profiling of the gut microbiome in disease-associated inflammation
D Börnigen, XC Morgan, EA Franzosa, B Ren, RJ Xavier, WS Garrett, ...
Genome medicine 5 (7), 65, 2013
482013
Chthonomonas calidirosea gen. nov., sp. nov., an aerobic, pigmented, thermophilic micro-organism of a novel bacterial class, Chthonomonadetes classis nov., of the newly …
KCY Lee, PF Dunfield, XC Morgan, MA Crowe, KM Houghton, ...
International journal of systematic and evolutionary microbiology 61 (10 …, 2011
452011
Urban transit system microbial communities differ by surface type and interaction with humans and the environment
T Hsu, R Joice, J Vallarino, G Abu-Ali, EM Hartmann, A Shafquat, ...
Msystems 1 (3), e00018-16, 2016
332016
Electing a candidate: a speculative history of the bacterial phylum OP10
PF Dunfield, I Tamas, KC Lee, XC Morgan, IR McDonald, MB Stott
Environmental microbiology 14 (12), 3069-3080, 2012
332012
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Articles 1–20