Niles A. Pierce
Cited by
Cited by
Triggered amplification by hybridization chain reaction
RM Dirks, NA Pierce
Proceedings of the National Academy of Sciences of the United States of …, 2004
NUPACK: analysis and design of nucleic acid systems
JN Zadeh, CD Steenberg, JS Bois, BR Wolfe, MB Pierce, AR Khan, ...
Journal of computational chemistry 32 (1), 170-173, 2011
Programming biomolecular self-assembly pathways
P Yin, HMT Choi, CR Calvert, NA Pierce
Nature 451 (7176), 318-322, 2008
An introduction to the adjoint approach to design
MB Giles, NA Pierce
Flow, turbulence and combustion 65 (3-4), 393-415, 2000
Third-generation in situ hybridization chain reaction: multiplexed, quantitative, sensitive, versatile, robust
HMT Choi, M Schwarzkopf, ME Fornace, A Acharya, G Artavanis, ...
Development 145, doi:10.1242/dev.165753, 2018
Optimum aerodynamic design using the Navier–Stokes equations
A Jameson, L Martinelli, NA Pierce
Theoretical and computational fluid dynamics 10 (1-4), 213-237, 1998
A synthetic DNA walker for molecular transport
JS Shin, NA Pierce
Journal of the American Chemical Society 126 (35), 10834-10835, 2004
Programmable in situ amplification for multiplexed imaging of mRNA expression
HMT Choi, JY Chang, LA Trinh, JE Padilla, SE Fraser, NA Pierce
Nature biotechnology 28 (11), 1208-1212, 2010
Next-Generation in Situ Hybridization Chain Reaction: Higher Gain, Lower Cost, Greater Durability
HMT Choi, VA Beck, NA Pierce
ACS Nano 8 (5), 4284-4294, 2014
A partition function algorithm for nucleic acid secondary structure including pseudoknots
RM Dirks, NA Pierce
Journal of computational chemistry 24 (13), 1664-1677, 2003
Thermodynamic analysis of interacting nucleic acid strands
RM Dirks, JS Bois, JM Schaeffer, E Winfree, NA Pierce
SIAM review 49 (1), 65-88, 2007
Algorithm developments for discrete adjoint methods
M Giles, MC Duta, JD Müller, NA Pierce
AIAA Journal 41 (2), 198-205, 2003
Adjoint equations in CFD: Duality, boundary conditions and solution behaviour
MB Giles, NA Pierce
13th Computational Fluid Dynamics Conference, 1997
Adjoint recovery of superconvergent functionals from PDE approximations
NA Pierce, MB Giles
SIAM Review 42 (2), 247-264, 2000
An autonomous polymerization motor powered by DNA hybridization
S Venkataraman, RM Dirks, PWK Rothemund, E Winfree, NA Pierce
Nature nanotechnology 2 (8), 490-494, 2007
Protein design is NP-hard
NA Pierce, E Winfree
Protein Engineering 15 (10), 779-782, 2002
Paradigms for computational nucleic acid design
RM Dirks, M Lin, E Winfree, NA Pierce
Nucleic Acids Research 32 (4), 1392-1403, 2004
Nucleic acid sequence design via efficient ensemble defect optimization
JN Zadeh, BR Wolfe, NA Pierce
Journal of computational chemistry 32 (3), 439-452, 2011
An algorithm for computing nucleic acid base‐pairing probabilities including pseudoknots
RM Dirks, NA Pierce
Journal of computational chemistry 25 (10), 1295-1304, 2004
Single-molecule RNA detection at depth via hybridization chain reaction and tissue hydrogel embedding and clearing
S Shah, E Lubeck, M Schwarzkopf, TF He, A Greenbaum, C Ho Sohn, ...
Development 143, 2862-2867, 2016
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