Niles A. Pierce
Niles A. Pierce
Professor of Applied & Computational Mathematics and Bioengineering, California Institute of
Verified email at caltech.edu - Homepage
TitleCited byYear
Triggered amplification by hybridization chain reaction
RM Dirks, NA Pierce
Proceedings of the National Academy of Sciences of the United States of …, 2004
10002004
Programming biomolecular self-assembly pathways
P Yin, HMT Choi, CR Calvert, NA Pierce
Nature 451 (7176), 318-322, 2008
9422008
An introduction to the adjoint approach to design
MB Giles, NA Pierce
Flow, turbulence and combustion 65 (3-4), 393-415, 2000
8342000
NUPACK: analysis and design of nucleic acid systems
JN Zadeh, CD Steenberg, JS Bois, BR Wolfe, MB Pierce, AR Khan, ...
Journal of computational chemistry 32 (1), 170-173, 2011
7012011
A synthetic DNA walker for molecular transport
JS Shin, NA Pierce
Journal of the American Chemical Society 126 (35), 10834-10835, 2004
6492004
Optimum aerodynamic design using the Navier–Stokes equations
A Jameson, L Martinelli, NA Pierce
Theoretical and computational fluid dynamics 10 (1-4), 213-237, 1998
6411998
Programmable in situ amplification for multiplexed imaging of mRNA expression
HMT Choi, JY Chang, LA Trinh, JE Padilla, SE Fraser, NA Pierce
Nature biotechnology 28 (11), 1208-1212, 2010
3652010
A partition function algorithm for nucleic acid secondary structure including pseudoknots
RM Dirks, NA Pierce
Journal of computational chemistry 24 (13), 1664-1677, 2003
3612003
Thermodynamic analysis of interacting nucleic acid strands
RM Dirks, JS Bois, JM Schaeffer, E Winfree, NA Pierce
SIAM review 49 (1), 65-88, 2007
2882007
Adjoint recovery of superconvergent functionals from PDE approximations
NA Pierce, MB Giles
SIAM Review 42 (2), 247-264, 2000
2872000
An autonomous polymerization motor powered by DNA hybridization
S Venkataraman, RM Dirks, PWK Rothemund, E Winfree, NA Pierce
Nature nanotechnology 2 (8), 490-494, 2007
2712007
Algorithm developments for discrete adjoint methods
M Giles, MC Duta, JD Müller, NA Pierce
AIAA Journal 41 (2), 198-205, 2003
2622003
Next-Generation in Situ Hybridization Chain Reaction: Higher Gain, Lower Cost, Greater Durability
HMT Choi, VA Beck, NA Pierce
ACS Nano 8 (5), 4284-4294, 2014
2452014
Protein design is NP-hard
NA Pierce, E Winfree
Protein Engineering 15 (10), 779-782, 2002
2422002
Paradigms for computational nucleic acid design
RM Dirks, M Lin, E Winfree, NA Pierce
Nucleic Acids Research 32 (4), 1392-1403, 2004
2082004
Conformational splitting: A more powerful criterion for dead‐end elimination
NA Pierce, JA Spriet, J Desmet, SL Mayo
Journal of computational chemistry 21 (11), 999-1009, 2000
2012000
An algorithm for computing nucleic acid base‐pairing probabilities including pseudoknots
RM Dirks, NA Pierce
Journal of computational chemistry 25 (10), 1295-1304, 2004
1712004
Exact rotamer optimization for protein design
DB Gordon, GK Hom, SL Mayo, NA Pierce
Journal of computational chemistry 24 (2), 232-243, 2003
1612003
Nucleic acid sequence design via efficient ensemble defect optimization
JN Zadeh, BR Wolfe, NA Pierce
Journal of computational chemistry 32 (3), 439-452, 2011
1472011
Analytic adjoint solutions for the quasi-one-dimensional Euler equations
MB Giles, NA Pierce
Journal of Fluid Mechanics 426, 327-345, 2001
1472001
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