| CATH: comprehensive structural and functional annotations for genome sequences I Sillitoe, TE Lewis, A Cuff, S Das, P Ashford, NL Dawson, N Furnham, ... Nucleic acids research 43 (D1), D376-D381, 2015 | 475 | 2015 |
| Evolution of antibiotic resistance is linked to any genetic mechanism affecting bacterial duration of carriage S Lehtinen, F Blanquart, NJ Croucher, P Turner, M Lipsitch, C Fraser Proceedings of the National Academy of Sciences 114 (5), 1075-1080, 2017 | 141 | 2017 |
| Estimating the effects of non-pharmaceutical interventions on the number of new infections with COVID-19 during the first epidemic wave N Banholzer, E Van Weenen, A Lison, A Cenedese, A Seeliger, ... PLoS one 16 (6), e0252827, 2021 | 92 | 2021 |
| Quantifying the impact of quarantine duration on COVID-19 transmission P Ashcroft, S Lehtinen, DC Angst, N Low, S Bonhoeffer Elife 10, e63704, 2021 | 91 | 2021 |
| COVID-19 infectivity profile correction P Ashcroft, JS Huisman, S Lehtinen, JA Bouman, CL Althaus, RR Regoes, ... arXiv preprint arXiv:2007.06602, 2020 | 87 | 2020 |
| Gene3D: expanding the utility of domain assignments SD Lam, NL Dawson, S Das, I Sillitoe, P Ashford, D Lee, S Lehtinen, ... Nucleic acids research 44 (D1), D404-D409, 2016 | 80 | 2016 |
| On the evolutionary ecology of multidrug resistance in bacteria S Lehtinen, F Blanquart, M Lipsitch, C Fraser, ... PLoS pathogens 15 (5), e1007763, 2019 | 76 | 2019 |
| On the relationship between serial interval, infectiousness profile and generation time S Lehtinen, P Ashcroft, S Bonhoeffer Journal of the Royal Society Interface 18 (174), 20200756, 2021 | 65 | 2021 |
| The evolution of antibiotic resistance in a structured host population F Blanquart, S Lehtinen, M Lipsitch, C Fraser Journal of The Royal Society Interface 15 (143), 20180040, 2018 | 65 | 2018 |
| An evolutionary model to predict the frequency of antibiotic resistance under seasonal antibiotic use, and an application to Streptococcus pneumoniae F Blanquart, S Lehtinen, C Fraser Proceedings of the Royal Society B: Biological Sciences 284 (1855), 20170679, 2017 | 47 | 2017 |
| Mathematical modelling for antibiotic resistance control policy: do we know enough? GM Knight, NG Davies, C Colijn, F Coll, T Donker, DR Gifford, RE Glover, ... BMC infectious diseases 19, 1-9, 2019 | 46 | 2019 |
| Factors favouring the evolution of multidrug resistance in bacteria E Jacopin, S Lehtinen, F Débarre, F Blanquart Journal of the Royal Society Interface 17 (168), 20200105, 2020 | 33 | 2020 |
| Stress induces remodelling of yeast interaction and co-expression networks S Lehtinen, FX Marsellach, S Codlin, A Schmidt, M Clément-Ziza, A Beyer, ... Molecular BioSystems 9 (7), 1697-1707, 2013 | 31 | 2013 |
| Evolutionary mechanisms that determine which bacterial genes are carried on plasmids S Lehtinen, JS Huisman, S Bonhoeffer Evolution Letters 5 (3), 290-301, 2021 | 29 | 2021 |
| Horizontal gene transfer rate is not the primary determinant of observed antibiotic resistance frequencies in Streptococcus pneumoniae S Lehtinen, C Chewapreecha, J Lees, WP Hanage, M Lipsitch, ... Science advances 6 (21), eaaz6137, 2020 | 28 | 2020 |
| Test-trace-isolate-quarantine (TTIQ) intervention strategies after symptomatic COVID-19 case identification P Ashcroft, S Lehtinen, S Bonhoeffer PloS one 17 (2), e0263597, 2022 | 23 | 2022 |
| Gene function prediction from functional association networks using kernel partial least squares regression S Lehtinen, J Lees, J Bähler, J Shawe-Taylor, C Orengo PloS one 10 (8), e0134668, 2015 | 17 | 2015 |
| Plasmid co-infection: linking biological mechanisms to ecological and evolutionary dynamics C Igler, JS Huisman, B Siedentop, S Bonhoeffer, S Lehtinen Philosophical Transactions of the Royal Society B 377 (1842), 20200478, 2022 | 8 | 2022 |
| Epidemiological dynamics of bacteriocin competition and antibiotic resistance S Lehtinen, NJ Croucher, F Blanquart, C Fraser Proceedings of the Royal Society B 289 (1984), 20221197, 2022 | 6 | 2022 |
| Co-expression network models suggest that stress increases tolerance to mutations S Lehtinen, J Bähler, C Orengo Scientific reports 5 (1), 16726, 2015 | 5 | 2015 |
