Fyodor A Kondrashov

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Eugene KooninSenior Investigator, NCBI, NIHVerified email at ncbi.nlm.nih.gov
Vlasov PKInstitute of Science and Technology Austria (IST Austria)Verified email at ist.ac.at
Dmitry IvankovAssistant Professor, Skolkovo Institute of Science and TechnologyVerified email at skoltech.ru
Shamil SunyaevProfessor of Biomedical Informatics and of Medicine (BWH), Harvard Medical SchoolVerified email at rics.bwh.harvard.edu
Igor RogozinAdjunct Professor, OstravaVerified email at mail.nih.gov
Natalya BogatyrevaPostdoc at CRG, BarcelonaVerified email at crg.eu
Cedric NotredameCentre for Genomic Regulation, SpainVerified email at crg.eu
Dinara UsmanovaColumbia UniversityVerified email at cumc.columbia.edu
Alexander S MishinShemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of SciencesVerified email at ibch.ru
Katya PutintsevaBriefly BioVerified email at briefly.bio
Karen SarkisyanSynthetic biologyVerified email at imperial.ac.uk
Onuralp SoylemezHarvard Medical SchoolVerified email at broadinstitute.org
Margarita MeerSenior Scientist, Altos LabsVerified email at altoslabs.com
Michael S. Breen, PhDDepts. Genetics and Genomic Sciences, Psychiatry, Icahn School of Medicine at Mount SinaiVerified email at mssm.edu
I. King JordanProfessor, Director: Bioinformatics Program, School of Biology, Georgia TechVerified email at biology.gatech.edu
Ivan AdzhubeiHarvard Medical School, Dept of Bioimedical Informatics (DBMI)Verified email at hms.harvard.edu
Georgii A BazykinVisiting Professor, Emory UniversityVerified email at emory.edu
Nina G. BozhanovaVanderbilt UniversityVerified email at vanderbilt.edu
Hideki InnanGraduate University for Advanced StudiesVerified email at soken.ac.jp
Bolotin DmitryMiLaboratories Inc.Verified email at milaboratories.com

Fyodor A Kondrashov

Okinawa Institute of Science and Technology

Verified email at oist.jp - Homepage

evolution fitness landscapes genomics bioinformatics synthetic biology


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The evolution of gene duplications: classifying and distinguishing between models H Innan, F Kondrashov Nature Reviews Genetics 11 (2), 97-108, 2010	1372	2010
Selection in the evolution of gene duplications FA Kondrashov, IB Rogozin, YI Wolf, EV Koonin Genome biology 3, 1-9, 2002	883	2002
The ctenophore genome and the evolutionary origins of neural systems LL Moroz, KM Kocot, MR Citarella, S Dosung, TP Norekian, ... Nature 510 (7503), 109-114, 2014	805	2014
Interactions among quantitative traits in the course of sympatric speciation AS Kondrashov, FA Kondrashov Nature 400 (6742), 351-354, 1999	660	1999
Gene duplication as a mechanism of genomic adaptation to a changing environment FA Kondrashov Proceedings of the Royal Society B: Biological Sciences 279 (1749), 5048-5057, 2012	659	2012
Local fitness landscape of the green fluorescent protein KS Sarkisyan, DA Bolotin, MV Meer, DR Usmanova, AS Mishin, ... Nature 533 (7603), 397-401, 2016	627	2016
Selection for short introns in highly expressed genes CI Castillo-Davis, SL Mekhedov, DL Hartl, EV Koonin, FA Kondrashov Nature genetics 31 (4), 415-418, 2002	618	2002
Epistasis as the primary factor in molecular evolution MS Breen, C Kemena, PK Vlasov, C Notredame, FA Kondrashov Nature 490 (7421), 535-538, 2012	445	2012
Dobzhansky–Muller incompatibilities in protein evolution AS Kondrashov, S Sunyaev, FA Kondrashov Proceedings of the National Academy of Sciences 99 (23), 14878-14883, 2002	346	2002
A universal trend of amino acid gain and loss in protein evolution IK Jordan, FA Kondrashov, IA Adzhubei, YI Wolf, EV Koonin, ... Nature 433 (7026), 633-638, 2005	330	2005
Role of selection in fixation of gene duplications FA Kondrashov, AS Kondrashov Journal of Theoretical Biology 239 (2), 141-151, 2006	231	2006
Sequence space and the ongoing expansion of the protein universe IS Povolotskaya, FA Kondrashov Nature 465 (7300), 922-926, 2010	227	2010
A common framework for understanding the origin of genetic dominance and evolutionary fates of gene duplications FA Kondrashov, EV Koonin Trends in Genetics 20 (7), 287-290, 2004	220	2004
Evolution of glyoxylate cycle enzymes in Metazoa: evidence of multiple horizontal transfer events and pseudogene formation FA Kondrashov, EV Koonin, IG Morgunov, TV Finogenova, ... Biology direct 1, 1-14, 2006	208	2006
Presence of ATG triplets in 5′ untranslated regions of eukaryotic cDNAs correlates with a ‘weak’context of the start codon IB Rogozin, AV Kochetov, FA Kondrashov, EV Koonin, L Milanesi Bioinformatics 17 (10), 890-900, 2001	203	2001
Using AlphaFold to predict the impact of single mutations on protein stability and function MA Pak, KA Markhieva, MS Novikova, DS Petrov, IS Vorobyev, ... Plos one 18 (3), e0282689, 2023	197	2023
Genetically encodable bioluminescent system from fungi AA Kotlobay, KS Sarkisyan, YA Mokrushina, M Marcet-Houben, ... Proceedings of the National Academy of Sciences 115 (50), 12728-12732, 2018	191	2018
Complete mitochondrial genome and phylogeny of Pleistocene mammoth Mammuthus primigenius EI Rogaev, YK Moliaka, BA Malyarchuk, FA Kondrashov, MV Derenko, ... PLoS Biology 4 (3), e73, 2006	187	2006
Prediction of functional sites by analysis of sequence and structure conservation AR Panchenko, F Kondrashov, S Bryant Protein science 13 (4), 884-892, 2004	181	2004
Origin of alternative splicing by tandem exon duplication FA Kondrashov, EV Koonin Human molecular genetics 10 (23), 2661-2669, 2001	180	2001

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