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Kanika Arora
Kanika Arora
Sr Computational Biologist II, MSKCC
Verified email at mskcc.org
Title
Cited by
Cited by
Year
Organoid Profiling Identifies Common Responders to Chemotherapy in Pancreatic CancerPancreatic Cancer Organoids Parallel Patient Response
H Tiriac, P Belleau, DD Engle, D Plenker, A Deschênes, TDD Somerville, ...
Cancer discovery 8 (9), 1112-1129, 2018
4952018
Immunogenic neoantigens derived from gene fusions stimulate T cell responses
W Yang, KW Lee, RM Srivastava, F Kuo, C Krishna, D Chowell, ...
Nature medicine 25 (5), 767-775, 2019
1792019
Genetic determinants of cisplatin resistance in patients with advanced germ cell tumors
A Bagrodia, BH Lee, W Lee, EK Cha, JP Sfakianos, G Iyer, EJ Pietzak, ...
Journal of Clinical Oncology 34 (33), 4000, 2016
1262016
Indel variant analysis of short-read sequencing data with Scalpel
H Fang, EA Bergmann, K Arora, V Vacic, MC Zody, I Iossifov, JA O'Rawe, ...
Nature protocols 11 (12), 2529-2548, 2016
842016
Distinct classes of complex structural variation uncovered across thousands of cancer genome graphs
K Hadi, X Yao, JM Behr, A Deshpande, C Xanthopoulakis, H Tian, ...
Cell 183 (1), 197-210. e32, 2020
752020
Genome-wide somatic variant calling using localized colored de Bruijn graphs
G Narzisi, A Corvelo, K Arora, EA Bergmann, M Shah, R Musunuri, ...
Communications biology 1 (1), 1-9, 2018
702018
Gene silencing in Tribolium castaneum as a tool for the targeted identification of candidate RNAi targets in crop pests
E Knorr, E Fishilevich, L Tenbusch, MLF Frey, M Rangasamy, A Billion, ...
Scientific reports 8 (1), 1-15, 2018
672018
PGBD5 promotes site-specific oncogenic mutations in human tumors
AG Henssen, R Koche, J Zhuang, E Jiang, C Reed, A Eisenberg, E Still, ...
Nature genetics 49 (7), 1005-1014, 2017
562017
Conpair: concordance and contamination estimator for matched tumor–normal pairs
EA Bergmann, BJ Chen, K Arora, V Vacic, MC Zody
Bioinformatics 32 (20), 3196-3198, 2016
492016
Genetic mechanisms of primary chemotherapy resistance in pediatric acute myeloid leukemia
NA McNeer, J Philip, H Geiger, RE Ries, VP Lavallee, M Walsh, M Shah, ...
Leukemia 33 (8), 1934-1943, 2019
402019
Comparing sequencing assays and human-machine analyses in actionable genomics for glioblastoma
KO Wrzeszczynski, MO Frank, T Koyama, K Rhrissorrakrai, N Robine, ...
Neurology Genetics 3 (4), 2017
382017
Use of chromatin remodeling ATPases as RNAi targets for parental control of western corn rootworm (Diabrotica virgifera virgifera) and Neotropical brown stink bug (Euschistus …
E Fishilevich, AM Vélez, C Khajuria, MLF Frey, RL Hamm, H Wang, ...
Insect biochemistry and molecular biology 71, 58-71, 2016
332016
Integrative genetic analysis of mouse and human AML identifies cooperating disease alleles
MA Hatlen, K Arora, V Vacic, EA Grabowska, W Liao, B Riley-Gillis, ...
Journal of Experimental Medicine 213 (1), 25-34, 2016
232016
Diverse alterations associated with resistance to KRAS (G12C) inhibition
Y Zhao, YR Murciano-Goroff, JY Xue, A Ang, J Lucas, TT Mai, ...
Nature 599 (7886), 679-683, 2021
202021
Deep whole-genome sequencing of 3 cancer cell lines on 2 sequencing platforms
K Arora, M Shah, M Johnson, R Sanghvi, J Shelton, K Nagulapalli, ...
Scientific reports 9 (1), 1-13, 2019
192019
Analytical validation of clinical whole-genome and transcriptome sequencing of patient-derived tumors for reporting targetable variants in cancer
KO Wrzeszczynski, V Felice, A Abhyankar, L Kozon, H Geiger, D Manaa, ...
The Journal of Molecular Diagnostics 20 (6), 822-835, 2018
182018
Identification of targetable BRAF ΔN486_P490 variant by whole-genome sequencing leading to dabrafenib-induced remission of a BRAF-mutant pancreatic adenocarcinoma
KO Wrzeszczynski, S Rahman, MO Frank, K Arora, M Shah, H Geiger, ...
Molecular Case Studies 5 (6), a004424, 2019
162019
Novel patterns of complex structural variation revealed across thousands of cancer genome graphs
K Hadi, X Yao, JM Behr, A Deshpande, C Xanthopoulakis, J Rosiene, ...
BioRxiv, 836296, 2019
142019
Organoid profiling identifies common responders to chemotherapy in pancreatic cancer. Cancer Discov. 2018; 8 (9): 1112–29
H Tiriac, P Belleau, DD Engle, D Plenker, A Deschenes, TDD Somerville, ...
Epub 2018/06/02. doi: 10.1158/2159-8290. CD-18-0349. PubMed PMID: 29853643, 0
14
Organoid profiling identifies common responders to chemotherapy in pancreatic cancer. Cancer Discov. 2018; 8 (9): 1112–1129. doi: 10.1158/2159-8290
H Tiriac, P Belleau, DD Engle, D Plenker, A Deschênes, TDD Somerville, ...
CD-18-0349.[Europe PMC free article][Abstract][CrossRef][Google Scholar], 0
14
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