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David Kainer
David Kainer
Senior Research Fellow, ARC CoE for Plant Success, University of Queensland
Verified email at uq.edu.au
Title
Cited by
Cited by
Year
Selecting optimal partitioning schemes for phylogenomic datasets
R Lanfear, B Calcott, D Kainer, C Mayer, A Stamatakis
BMC evolutionary biology 14, 1-14, 2014
6882014
Accelerating climate resilient plant breeding by applying next-generation artificial intelligence
AL Harfouche, DA Jacobson, D Kainer, JC Romero, AH Harfouche, ...
Trends in biotechnology 37 (11), 1217-1235, 2019
1852019
Plant-Derived Terpenes: A Feedstock for Specialty Biofuels
R Mewalal, DK Rai, D Kainer, F Chen, C Külheim, GF Peter, GA Tuskan
Trends in Biotechnology 35 (3), 227-240, 2017
1712017
MinIONQC: fast and simple quality control for MinION sequencing data
R Lanfear, M Schalamun, D Kainer, W Wang, B Schwessinger
Bioinformatics 35 (3), 523-525, 2019
1572019
The effects of partitioning on phylogenetic inference
D Kainer, R Lanfear
Molecular biology and evolution 32 (6), 1611-1627, 2015
1252015
Multi‐trait genome‐wide association analysis of Populus trichocarpa identifies key polymorphisms controlling morphological and physiological traits
HB Chhetri, DM Sanz, D Kainer, AK Biswal, LM Evans, JG Chen, ...
New Phytologist, 2019
942019
Assembly of chloroplast genomes with long- and short-read data: a comparison of approaches using Eucalyptus pauciflora as a test case
W Wang, M Schalamun, A Morales-Suarez, D Kainer, B Schwessinger, ...
BMC genomics 19, 1-15, 2018
662018
Harnessing the MinION: An example of how to establish long‐read sequencing in a laboratory using challenging plant tissue from Eucalyptus pauciflora
M Schalamun, R Nagar, D Kainer, E Beavan, D Eccles, JP Rathjen, ...
Molecular ecology resources 19 (1), 77-89, 2019
652019
Potentially adaptive SARS-CoV-2 mutations discovered with novel spatiotemporal and explainable AI models
MR Garvin, ET Prates, M Pavicic, P Jones, BK Amos, A Geiger, MB Shah, ...
Genome Biology 21 (1), 1-26, 2020
632020
Attacking the opioid epidemic: determining the epistatic and pleiotropic genetic architectures for chronic pain and opioid addiction
W Joubert, D Weighill, D Kainer, S Climer, A Justice, K Fagnan, ...
SC18: International Conference for High Performance Computing, Networking …, 2018
602018
The draft nuclear genome assembly of Eucalyptus pauciflora: a pipeline for comparing de novo assemblies
W Wang, A Das, D Kainer, M Schalamun, A Morales-Suarez, ...
GigaScience 9 (1), giz160, 2020
532020
Can exascale computing and explainable artificial intelligence applied to plant biology deliver on the United Nations sustainable development goals?
J Streich, J Romero, JGFM Gazolla, D Kainer, A Cliff, ET Prates, JB Brown, ...
Current Opinion in Biotechnology 61, 217-225, 2020
482020
A phylogenomic approach reveals a low somatic mutation rate in a long-lived plant
AJ Orr, A Padovan, D Kainer, C Külheim, L Bromham, C Bustos-Segura, ...
Proceedings of the Royal Society B 287 (1922), 20192364, 2020
472020
A genome-wide association study of suicide attempts in the million veterans program identifies evidence of pan-ancestry and ancestry-specific risk loci
NA Kimbrel, AE Ashley-Koch, XJ Qin, JH Lindquist, ME Garrett, ...
Molecular psychiatry 27 (4), 2264-2272, 2022
382022
A High-Performance Computing Implementation of Iterative Random Forest for the Creation of Predictive Expression Networks
A Cliff, J Romero, D Kainer, A Walker, A Furches, D Jacobson
Genes 10 (12), 996, 2019
352019
Accuracy of Genomic Prediction for Foliar Terpene Traits in Eucalyptus polybractea
D Kainer, EA Stone, A Padovan, WJ Foley, C Külheim
G3: Genes, Genomes, Genetics 8 (8), 2573-2583, 2018
352018
High marker density GWAS provides novel insights into the genomic architecture of terpene oil yield in Eucalyptus
D Kainer, A Padovan, J Degenhardt, S Krause, P Mondal, WJ Foley, ...
New Phytologist, 2019
322019
High Throughput Screening Technologies in Biomass Characterization
SR Decker, AE Harman-Ware, RM Happs, EJ Wolfrum, GA Tuskan, ...
Frontiers in Energy Research 6, 120, 2018
312018
Genomic approaches to selection in outcrossing perennials: focus on essential oil crops
D Kainer, R Lanfear, WJ Foley, C Külheim
Theoretical and applied genetics 128, 2351-2365, 2015
292015
Genome-Wide Association Study of Wood Anatomical and Morphological Traits in Populus trichocarpa
HB Chhetri, A Furches, D Macaya-Sanz, AR Walker, D Kainer, P Jones, ...
Frontiers in plant science 11, 545748, 2020
232020
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