Joshua C. Denny
Joshua C. Denny
Professor of Biomedical Informatics and Medicine, Vanderbilt University
Verified email at vanderbilt.edu
TitleCited byYear
Genetics of rheumatoid arthritis contributes to biology and drug discovery
Y Okada, D Wu, G Trynka, T Raj, C Terao, K Ikari, Y Kochi, K Ohmura, ...
Nature 506 (7488), 376, 2014
11742014
Defining the role of common variation in the genomic and biological architecture of adult human height
AR Wood, T Esko, J Yang, S Vedantam, TH Pers, S Gustafsson, AY Chu, ...
Nature genetics 46 (11), 1173, 2014
11682014
PheWAS: demonstrating the feasibility of a phenome-wide scan to discover gene–disease associations
JC Denny, MD Ritchie, MA Basford, JM Pulley, L Bastarache, ...
Bioinformatics 26 (9), 1205-1210, 2010
5682010
A gene-based association method for mapping traits using reference transcriptome data
ER Gamazon, HE Wheeler, KP Shah, SV Mozaffari, K Aquino-Michaels, ...
Nature genetics 47 (9), 1091, 2015
4802015
Systematic comparison of phenome-wide association study of electronic medical record data and genome-wide association study data
JC Denny, L Bastarache, MD Ritchie, RJ Carroll, R Zink, JD Mosley, ...
Nature biotechnology 31 (12), 1102, 2013
4492013
MedEx: a medication information extraction system for clinical narratives
H Xu, SP Stenner, S Doan, KB Johnson, LR Waitman, JC Denny
Journal of the American Medical Informatics Association 17 (1), 19, 2010
3982010
The electronic medical records and genomics (eMERGE) network: past, present, and future
O Gottesman, H Kuivaniemi, G Tromp, WA Faucett, R Li, TA Manolio, ...
Genetics in Medicine 15 (10), 761, 2013
3352013
Inactivating Mutations in NPC1L1 and Protection from Coronary Heart Disease
Myocardial Infarction Genetics Consortium Investigators
New England Journal of Medicine 371 (22), 2072-2082, 2014
3002014
Operational implementation of prospective genotyping for personalized medicine: the design of the Vanderbilt PREDICT project
JM Pulley, JC Denny, JF Peterson, GR Bernard, CL Vnencak-Jones, ...
Clinical Pharmacology & Therapeutics, 2012
2922012
Electronic medical records for genetic research: results of the eMERGE consortium
AN Kho, JA Pacheco, PL Peissig, L Rasmussen, KM Newton, N Weston, ...
Sci Transl Med 3, 79re1, 2011
2832011
Robust replication of genotype-phenotype associations across multiple diseases in an electronic medical record
MD Ritchie, JC Denny, DC Crawford, AH Ramirez, JB Weiner, JM Pulley, ...
The American Journal of Human Genetics 86 (4), 560-572, 2010
2792010
Data from clinical notes: a perspective on the tension between structure and flexible documentation
ST Rosenbloom, JC Denny, H Xu, N Lorenzi, WW Stead, KB Johnson
Journal of the American Medical Informatics Association 18 (2), 181-186, 2011
2412011
Validation of electronic medical record-based phenotyping algorithms: results and lessons learned from the eMERGE network
KM Newton, PL Peissig, AN Kho, SJ Bielinski, RL Berg, V Choudhary, ...
Journal of the American Medical Informatics Association 20 (e1), e147-e154, 2013
2352013
Use of diverse electronic medical record systems to identify genetic risk for type 2 diabetes within a genome-wide association study
AN Kho, MG Hayes, L Rasmussen-Torvik, JA Pacheco, WK Thompson, ...
Journal of the American Medical Informatics Association 19 (2), 212-218, 2012
2232012
Variants Near< i> FOXE1</i> Are Associated with Hypothyroidism and Other Thyroid Conditions: Using Electronic Medical Records for Genome-and Phenome-wide Studies
JC Denny, DC Crawford, MD Ritchie, SJ Bielinski, MA Basford, Y Bradford, ...
The American Journal of Human Genetics 89 (4), 529-542, 2011
2182011
Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function
C Pattaro, A Teumer, M Gorski, AY Chu, M Li, V Mijatovic, M Garnaas, ...
Nature communications 7, 10023, 2016
2052016
Computational phenotype discovery using unsupervised feature learning over noisy, sparse, and irregular clinical data
TA Lasko, JC Denny, MA Levy
PloS one 8 (6), e66341, 2013
2052013
A study of machine-learning-based approaches to extract clinical entities and their assertions from discharge summaries
M Jiang, Y Chen, M Liu, ST Rosenbloom, S Mani, JC Denny, H Xu
Journal of the American Medical Informatics Association 18 (5), 601-606, 2011
1842011
Detecting drug interactions from adverse-event reports: interaction between paroxetine and pravastatin increases blood glucose levels
NP Tatonetti, JC Denny, SN Murphy, GH Fernald, G Krishnan, V Castro, ...
Clinical Pharmacology & Therapeutics 90 (1), 133-142, 2011
1802011
Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization
DE Arking, SL Pulit, L Crotti, P Van Der Harst, PB Munroe, TT Koopmann, ...
Nature genetics 46 (8), 826, 2014
1672014
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