Simon Moxon
Simon Moxon
Associate Professor of Bioinformatics, University of East Anglia
Verified email at uea.ac.uk
TitleCited byYear
The Pfam protein families database
A Bateman, L Coin, R Durbin, RD Finn, V Hollich, S Griffiths‐Jones, ...
Nucleic acids research 32 (suppl 1), D138-D141, 2004
61092004
Pfam: clans, web tools and services
RD Finn, J Mistry, B Schuster-Böckler, S Griffiths-Jones, V Hollich, ...
Nucleic acids research 34 (suppl_1), D247-D251, 2006
23342006
Rfam: annotating non-coding RNAs in complete genomes
S Griffiths-Jones, S Moxon, M Marshall, A Khanna, SR Eddy, A Bateman
Nucleic acids research 33 (suppl_1), D121-D124, 2005
12752005
Butterfly genome reveals promiscuous exchange of mimicry adaptations among species
KK Dasmahapatra, JR Walters, AD Briscoe, JW Davey, A Whibley, ...
Nature 487 (7405), 94, 2012
7872012
Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening
S Moxon, R Jing, G Szittya, F Schwach, RLR Pilcher, V Moulton, T Dalmay
Genome research 18 (10), 1602-1609, 2008
4512008
Identification of grapevine microRNAs and their targets using high‐throughput sequencing and degradome analysis
V Pantaleo, G Szittya, S Moxon, L Miozzi, V Moulton, T Dalmay, J Burgyan
The Plant Journal 62 (6), 960-976, 2010
3372010
High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families
G Szittya, S Moxon, DM Santos, R Jing, MPS Fevereiro, V Moulton, ...
BMC genomics 9 (1), 593, 2008
2672008
A toolkit for analysing large-scale plant small RNA datasets
S Moxon, F Schwach, T Dalmay, D MacLean, DJ Studholme, V Moulton
Bioinformatics 24 (19), 2252-2253, 2008
2562008
The UEA sRNA workbench: a suite of tools for analysing and visualizing next generation sequencing microRNA and small RNA datasets
MB Stocks, S Moxon, D Mapleson, HC Woolfenden, I Mohorianu, L Folkes, ...
Bioinformatics 28 (15), 2059-2061, 2012
2222012
Deep sequencing of viroid-derived small RNAs from grapevine provides new insights on the role of RNA silencing in plant-viroid interaction
B Navarro, V Pantaleo, A Gisel, S Moxon, T Dalmay, G Bisztray, F Di Serio, ...
PLoS One 4 (11), e7686, 2009
1272009
Structural and functional analysis of viral siRNAs
G Szittya, S Moxon, V Pantaleo, G Toth, RLR Pilcher, V Moulton, ...
PLoS pathogens 6 (4), e1000838, 2010
1262010
Profiling of short RNAs during fleshy fruit development reveals stage‐specific sRNAome expression patterns
I Mohorianu, F Schwach, R Jing, S Lopez‐Gomollon, S Moxon, G Szittya, ...
The Plant Journal 67 (2), 232-246, 2011
1242011
Deep sequencing analysis of viral short RNAs from an infected Pinot Noir grapevine
V Pantaleo, P Saldarelli, L Miozzi, A Giampetruzzi, A Gisel, S Moxon, ...
Virology 408 (1), 49-56, 2010
1002010
Identification of novel small RNAs in tomato (Solanum lycopersicum)
RLR Pilcher, S Moxon, N Pakseresht, V Moulton, K Manning, G Seymour, ...
Planta 226 (3), 709-717, 2007
1002007
Endogenous short RNAs generated by Dicer 2 and RNA-dependent RNA polymerase 1 regulate mRNAs in the basal fungus Mucor circinelloides
FE Nicolas, S Moxon, JP de Haro, S Calo, IV Grigoriev, S Torres-Martínez, ...
Nucleic acids research 38 (16), 5535-5541, 2010
812010
Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species
TC Mathers, Y Chen, G Kaithakottil, F Legeai, ST Mugford, ...
Genome biology 18 (1), 27, 2017
732017
Chromosomal-level assembly of the Asian seabass genome using long sequence reads and multi-layered scaffolding
S Vij, H Kuhl, IS Kuznetsova, A Komissarov, AA Yurchenko, ...
PLoS genetics 12 (4), e1005954, 2016
722016
PAREsnip: a tool for rapid genome-wide discovery of small RNA/target interactions evidenced through degradome sequencing
L Folkes, S Moxon, HC Woolfenden, MB Stocks, G Szittya, T Dalmay, ...
Nucleic acids research 40 (13), e103-e103, 2012
682012
RNAcentral: a vision for an international database of RNA sequences
A Bateman, S Agrawal, E Birney, EA Bruford, JM Bujnicki, G Cochrane, ...
Rna 17 (11), 1941-1946, 2011
612011
A single argonaute gene participates in exogenous and endogenous RNAi and controls cellular functions in the basal fungus Mucor circinelloides
M Cervantes, A Vila, FE Nicolás, S Moxon, JP de Haro, T Dalmay, ...
PLoS One 8 (7), e69283, 2013
402013
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