Greg Finak
Greg Finak
CTO, Ozette Technologies
Verified email at ozette.ai - Homepage
Title
Cited by
Cited by
Year
Stromal gene expression predicts clinical outcome in breast cancer
G Finak, N Bertos, F Pepin, S Sadekova, M Souleimanova, H Zhao, ...
Nature medicine 14 (5), 518-527, 2008
16992008
MAST: a flexible statistical framework for assessing transcriptional changes and characterizing heterogeneity in single-cell RNA sequencing data
G Finak, A McDavid, M Yajima, J Deng, V Gersuk, AK Shalek, CK Slichter, ...
Genome biology 16 (1), 1-13, 2015
10242015
Critical assessment of automated flow cytometry data analysis techniques
N Aghaeepour, G Finak, H Hoos, TR Mosmann, R Brinkman, R Gottardo, ...
Nature methods 10 (3), 228-238, 2013
5522013
Data exploration, quality control and testing in single-cell qPCR-based gene expression experiments
A McDavid, G Finak, PK Chattopadyay, M Dominguez, L Lamoreaux, ...
Bioinformatics 29 (4), 461-467, 2013
2882013
Safety and immunogenicity of a mRNA rabies vaccine in healthy adults: an open-label, non-randomised, prospective, first-in-human phase 1 clinical trial
M Alberer, U Gnad-Vogt, HS Hong, KT Mehr, L Backert, G Finak, ...
The Lancet 390 (10101), 1511-1520, 2017
2132017
Regulation of endocytosis via the oxygen-sensing pathway
Y Wang, O Roche, MS Yan, G Finak, AJ Evans, JL Metcalf, BE Hast, ...
Nature medicine 15 (3), 319-324, 2009
1992009
Standardizing flow cytometry immunophenotyping analysis from the human immunophenotyping consortium
G Finak, M Langweiler, M Jaimes, M Malek, J Taghiyar, Y Korin, ...
Scientific reports 6 (1), 1-11, 2016
1962016
COMPASS identifies T-cell subsets correlated with clinical outcomes
L Lin, G Finak, K Ushey, C Seshadri, TR Hawn, N Frahm, TJ Scriba, ...
Nature biotechnology 33 (6), 610-616, 2015
1872015
Gene expression signatures of morphologically normal breast tissue identify basal-like tumors
G Finak, S Sadekova, F Pepin, M Hallett, S Meterissian, F Halwani, ...
Breast Cancer Research 8 (5), 1-18, 2006
1612006
OpenCyto: an open source infrastructure for scalable, robust, reproducible, and automated, end-to-end flow cytometry data analysis
G Finak, J Frelinger, W Jiang, EW Newell, J Ramey, MM Davis, ...
PLoS computational biology 10 (8), e1003806, 2014
1312014
Hypoxia promotes ligand-independent EGF receptor signaling via hypoxia-inducible factor–mediated upregulation of caveolin-1
Y Wang, O Roche, C Xu, EH Moriyama, P Heir, J Chung, FC Roos, ...
Proceedings of the National Academy of Sciences 109 (13), 4892-4897, 2012
1262012
Merging mixture components for cell population identification in flow cytometry
G Finak, A Bashashati, R Brinkman, R Gottardo
Advances in bioinformatics 2009, 2009
1222009
flowCore: Basic structures for flow cytometry data
B Ellis, P Haaland, F Hahne, N Le Meur, N Gopalakrishnan, J Spidlen, ...
R package version 1 (0), 2019
1152019
Distinct activation thresholds of human conventional and innate-like memory T cells
CK Slichter, A McDavid, HW Miller, G Finak, BJ Seymour, JP McNevin, ...
JCI insight 1 (8), 2016
1012016
Optimizing transformations for automated, high throughput analysis of flow cytometry data
G Finak, JM Perez, A Weng, R Gottardo
BMC bioinformatics 11 (1), 1-13, 2010
862010
Highly multiplexed quantitation of gene expression on single cells
MH Dominguez, PK Chattopadhyay, S Ma, L Lamoreaux, A McDavid, ...
Journal of immunological methods 391 (1-2), 133-145, 2013
762013
flowDensity: reproducing manual gating of flow cytometry data by automated density-based cell population identification
M Malek, MJ Taghiyar, L Chong, G Finak, R Gottardo, RR Brinkman
Bioinformatics 31 (4), 606-607, 2015
742015
Thinking outside the gate: single-cell assessments in multiple dimensions
P Kvistborg, C Gouttefangeas, N Aghaeepour, A Cazaly, ...
Immunity 42 (4), 591, 2015
722015
Modeling bi-modality improves characterization of cell cycle on gene expression in single cells
A McDavid, L Dennis, P Danaher, G Finak, M Krouse, A Wang, P Webster, ...
PLoS computational biology 10 (7), e1003696, 2014
722014
Mixture models for single-cell assays with applications to vaccine studies
G Finak, A McDavid, P Chattopadhyay, M Dominguez, S De Rosa, ...
Biostatistics 15 (1), 87-101, 2014
642014
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