| A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers MA Quail, M Smith, P Coupland, TD Otto, SR Harris, TR Connor, A Bertoni, ... BMC genomics 13 (1), 1-13, 2012 | 2387 | 2012 |
| Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins NJ Croucher, AJ Page, TR Connor, AJ Delaney, JA Keane, SD Bentley, ... Nucleic acids research 43 (3), e15-e15, 2015 | 1323 | 2015 |
| Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance in Klebsiella pneumoniae, an urgent threat to public health KE Holt, H Wertheim, RN Zadoks, S Baker, CA Whitehouse, D Dance, ... Proceedings of the National Academy of Sciences 112 (27), E3574-E3581, 2015 | 810 | 2015 |
| Evaluating the effects of SARS-CoV-2 spike mutation D614G on transmissibility and pathogenicity E Volz, V Hill, JT McCrone, A Price, D Jorgensen, Á O’Toole, J Southgate, ... Cell 184 (1), 64-75. e11, 2021 | 755 | 2021 |
| Emergence and global spread of epidemic healthcare-associated Clostridium difficile M He, F Miyajima, P Roberts, L Ellison, DJ Pickard, MJ Martin, TR Connor, ... Nature genetics 45 (1), 109-113, 2013 | 720 | 2013 |
| Evidence for several waves of global transmission in the seventh cholera pandemic A Mutreja, DW Kim, NR Thomson, TR Connor, JH Lee, S Kariuki, ... Nature 477 (7365), 462-465, 2011 | 688 | 2011 |
| Targeted Restoration of the Intestinal Microbiota with a Simple, Defined Bacteriotherapy Resolves Relapsing Clostridium difficile Disease in Mice TD Lawley, S Clare, AW Walker, MD Stares, TR Connor, C Raisen, ... PLoS pathogens 8 (10), e1002995, 2012 | 582 | 2012 |
| Hierarchical and spatially explicit clustering of DNA sequences with BAPS software L Cheng, TR Connor, J Sirén, DM Aanensen, J Corander Molecular biology and evolution 30 (5), 1224-1228, 2013 | 491 | 2013 |
| Intracontinental spread of human invasive Salmonella Typhimurium pathovariants in sub-Saharan Africa CK Okoro, RA Kingsley, TR Connor, SR Harris, CM Parry, ... Nature genetics 44 (11), 1215-1221, 2012 | 379 | 2012 |
| Distinguishable epidemics of multidrug-resistant Salmonella Typhimurium DT104 in different hosts AE Mather, SWJ Reid, DJ Maskell, J Parkhill, MC Fookes, SR Harris, ... Science 341 (6153), 1514-1517, 2013 | 334 | 2013 |
| Hospital admission and emergency care attendance risk for SARS-CoV-2 delta (B. 1.617. 2) compared with alpha (B. 1.1. 7) variants of concern: a cohort study KA Twohig, T Nyberg, A Zaidi, S Thelwall, MA Sinnathamby, S Aliabadi, ... The Lancet Infectious Diseases 22 (1), 35-42, 2022 | 318 | 2022 |
| Genome Sequencing and Analysis of the Tasmanian Devil and Its Transmissible Cancer EP Murchison, OB Schulz-Trieglaff, Z Ning, LB Alexandrov, MJ Bauer, ... Cell 148 (4), 780-791, 2012 | 314 | 2012 |
| Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK L Du Plessis, JT McCrone, AE Zarebski, V Hill, C Ruis, B Gutierrez, ... Science 371 (6530), 708-712, 2021 | 229 | 2021 |
| Recurrent emergence of SARS-CoV-2 spike deletion H69/V70 and its role in the Alpha variant B. 1.1. 7 B Meng, SA Kemp, G Papa, R Datir, IATM Ferreira, S Marelli, WT Harvey, ... Cell reports 35 (13), 109292, 2021 | 206 | 2021 |
| Salmonella bongori Provides Insights into the Evolution of the Salmonellae M Fookes, GN Schroeder, GC Langridge, CJ Blondel, C Mammina, ... PLoS pathogens 7 (8), e1002191, 2011 | 205 | 2011 |
| Detection of recombination events in bacterial genomes from large population samples P Marttinen, WP Hanage, NJ Croucher, TR Connor, SR Harris, ... Nucleic acids research 40 (1), e6-e6, 2012 | 203 | 2012 |
| Patterns of genome evolution that have accompanied host adaptation in Salmonella GC Langridge, M Fookes, TR Connor, T Feltwell, N Feasey, BN Parsons, ... Proceedings of the National Academy of Sciences 112 (3), 863-868, 2015 | 197 | 2015 |
| Whole genome sequencing reveals potential spread of Clostridium difficile between humans and farm animals in the Netherlands, 2002 to 2011 CW Knetsch, TR Connor, A Mutreja, SM Van Dorp, IM Sanders, ... Eurosurveillance 19 (45), 20954, 2014 | 197 | 2014 |
| Hyper-recombination, diversity, and antibiotic resistance in pneumococcus WP Hanage, C Fraser, J Tang, TR Connor, J Corander Science 324 (5933), 1454-1457, 2009 | 193 | 2009 |
| Intercontinental dissemination of azithromycin-resistant shigellosis through sexual transmission: a cross-sectional study KS Baker, TJ Dallman, PM Ashton, M Day, G Hughes, PD Crook, ... The Lancet infectious diseases 15 (8), 913-921, 2015 | 191 | 2015 |
Simon R. HarrisHead of Bioinformatics, MicrobioticaVerified email at sanger.ac.uk
