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Arjan van der Velde
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Interaction of tau with the RNA-binding protein TIA1 regulates tau pathophysiology and toxicity
T Vanderweyde, DJ Apicco, K Youmans-Kidder, PEA Ash, C Cook, ...
Cell reports 15 (7), 1455-1466, 2016
2872016
The good, the bad and the ugly: a tale of miR-101, miR-21 and miR-155 in pancreatic intraductal papillary mucinous neoplasms
S Caponi, N Funel, AE Frampton, F Mosca, L Santarpia, ...
Annals of oncology 24 (3), 734-741, 2013
1202013
Role of CYB5A in pancreatic cancer prognosis and autophagy modulation
E Giovannetti, Q Wang, A Avan, N Funel, T Lagerweij, JH Lee, V Caretti, ...
Journal of the National Cancer Institute 106 (1), djt346, 2014
1102014
High-throughput microRNA (miRNAs) arrays unravel the prognostic role of MiR-211 in pancreatic cancer
E Giovannetti, A Van Der Velde, N Funel, E Vasile, V Perrone, LG Leon, ...
PloS one 7 (11), e49145, 2012
932012
Annotation of chromatin states in 66 complete mouse epigenomes during development
A van der Velde, K Fan, J Tsuji, JE Moore, MJ Purcaro, HE Pratt, Z Weng
Communications Biology 4 (1), 239, 2021
422021
Functional compensation among HMGN variants modulates the DNase I hypersensitive sites at enhancers
T Deng, ZI Zhu, S Zhang, Y Postnikov, D Huang, M Horsch, T Furusawa, ...
Genome research 25 (9), 1295-1308, 2015
422015
IRaPPA: information retrieval based integration of biophysical models for protein assembly selection
IH Moal, D Barradas-Bautista, B Jiménez-García, M Torchala, ...
Bioinformatics 33 (12), 1806-1813, 2017
372017
Factorbook: an updated catalog of transcription factor motifs and candidate regulatory motif sites
HE Pratt, GR Andrews, N Phalke, JD Huey, MJ Purcaro, A van der Velde, ...
Nucleic Acids Research 50 (D1), D141-D149, 2022
172022
Perspectives on ENCODE
F Abascal, R Acosta, NJ Addleman, J Adrian, V Afzal, B Aken, JA Akiyama
Nature 583 (7818), 693-699, 2020
162020
Quantifying the displacement of mismatches in multiple sequence alignment benchmarks
P Bawono, A Van Der Velde, S Abeln, J Heringa
PloS one 10 (5), e0127431, 2015
82015
Comprehensive arrays for expression profiling identify key microRNA to distinguish short and long survivors among resected pancreatic cancers patients
E Giovannetti, M Maftouh, N Funel, LG Leon, A Avan, S Caponi, ...
EUROPEAN JOURNAL OF CANCER 49, S574-S574, 2013
22013
Factorbook: an updated catalog of transcription factor motifs and candidate regulatory motif sites (vol 50, pg D141, 2022)
HE Pratt, GR Andrews, N Phalke, JD Huey, MJ Purcaro, A van der Velde, ...
NUCLEIC ACIDS RESEARCH 50 (8), 4800-4800, 2022
2022
Factorbook: an Updated Catalog of Transcription Factor Motifs and Candidate Regulatory Motif Sites [preprint]
HE Pratt, G Andrews, N Phalke, MJ Purcaro, A van der Velde, JE Moore, ...
2021
Perspectives on ENCODE
NJ Addleman, J Adrian, UK Baymuradov, A Bhaskar, N Boley, L Cao, ...
Nature 583 (7818), 693-698, 2020
2020
Delineation of chromatin states and transcription factor binding in mouse and tools for large-scale data integration
AG van der Velde
2019
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IH Moal, D Barradas-Bautista, B Jimenez-Garcia, M Torchala, ...
Bioinformatics 33 (12), 1806-1813, 2017
2017
LR-DNase: Predicting TF binding from DNase-seq data
A van der Velde, M Purcaro, WS Noble, Z Weng
bioRxiv, 082594, 2016
2016
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JHF Pedra
INFECTION AND IMMUNITY, 308-316, 2008
2008
CYB5A role in pancreatic cancer prognosis and autophagy modulation
E Giovannetti, Q Wang, A Avan, N Funel, T Lagerweij, JH Lee, V Caretti, ...
Distance-based MSA benchmarking scoring scheme: The importance of measuring the reference-query alignment shifts.
P Bawono, A van der Velde, S Abeln, J Heringa
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Articles 1–20