Chirag Nepal
Chirag Nepal
Assistant Professor, Univerisity of Copenhagen
Verified email at bric.dk - Homepage
Title
Cited by
Cited by
Year
The genome sequence of Atlantic cod reveals a unique immune system
B Star, AJ Nederbragt, S Jentoft, U Grimholt, M Malmstrøm, TF Gregers, ...
Nature 477 (7363), 207-210, 2011
6152011
Two independent transcription initiation codes overlap on vertebrate core promoters
V Haberle, N Li, Y Hadzhiev, C Plessy, C Previti, C Nepal, J Gehrig, ...
Nature 507 (7492), 381-385, 2014
1292014
Dynamic regulation of the transcription initiation landscape at single nucleotide resolution during vertebrate embryogenesis
C Nepal, Y Hadzhiev, C Previti, V Haberle, N Li, H Takahashi, ...
Genome research 23 (11), 1938-1950, 2013
852013
Neuropsychological deficits in mice depleted of the schizophrenia susceptibility gene CSMD1
VM Steen, C Nepal, KM Ersland, R Holdhus, M Nævdal, SM Ratvik, ...
PloS one 8 (11), e79501, 2013
472013
MIR21 drives resistance to heat shock protein 90 inhibition in cholangiocarcinoma
A Lampis, P Carotenuto, G Vlachogiannis, L Cascione, S Hedayat, ...
Gastroenterology 154 (4), 1066-1079. e5, 2018
342018
Genomic perturbations reveal distinct regulatory networks in intrahepatic cholangiocarcinoma
C Nepal, CJ O'Rourke, DVNP Oliveira, A Taranta, S Shema, P Gautam, ...
Hepatology 68 (3), 949-963, 2018
292018
Association of aflatoxin and gallbladder cancer
J Koshiol, YT Gao, M Dean, P Egner, C Nepal, K Jones, B Wang, ...
Gastroenterology 153 (2), 488-494. e1, 2017
282017
Transcriptional, post-transcriptional and chromatin-associated regulation of pri-miRNAs, pre-miRNAs and moRNAs
C Nepal, M Coolen, Y Hadzhiev, D Cussigh, P Mydel, VM Steen, ...
Nucleic acids research 44 (7), 3070-3081, 2016
252016
Neural stem cell quiescence and stemness are molecularly distinct outputs of the Notch3 signalling cascade in the vertebrate adult brain
E Than-Trong, S Ortica-Gatti, S Mella, C Nepal, A Alunni, L Bally-Cuif
Development 145 (10), dev161034, 2018
242018
RevSex duplication-induced and sex-related differences in the SOX9 regulatory region chromatin landscape in human fibroblasts
H Lybæk, D de Bruijn, AHA den Engelsman-van Dijk, D Vanichkina, ...
Epigenetics 9 (3), 416-427, 2014
192014
PRI-modeler: extracting RNA structural elements from PDB files of protein–RNA complexes
K Han, C Nepal
FEBS letters 581 (9), 1881-1890, 2007
182007
The Tetraodon nigroviridis reference transcriptome: developmental transition, length retention and microsynteny of long non-coding RNAs in a compact vertebrate genome
S Basu, Y Hadzhiev, G Petrosino, C Nepal, J Gehrig, O Armant, M Ferg, ...
Scientific reports 6 (1), 1-14, 2016
82016
Identification of a Pan‐Gamma‐Secretase Inhibitor Response Signature for Notch‐Driven Cholangiocarcinoma
CJ O’Rourke, MS Matter, C Nepal, R Caetano‐Oliveira, PT Ton, ...
Hepatology 71 (1), 196-213, 2020
42020
Dual-initiation promoters with intertwined canonical and TCT/TOP transcription start sites diversify transcript processing
C Nepal, Y Hadzhiev, P Balwierz, E Tarifeño-Saldivia, R Cardenas, ...
Nature communications 11 (1), 1-16, 2020
32020
Spatial reasoning for collision detection and hardware implementation
C Nepal, SW Nam, D Kim, K Han
Intelligent Control and Automation, 596-601, 2006
22006
HOTAIR ancient sequence suggests regulatory roles both in cis and trans
C Nepal, Y Hadzheiv, S Pundhir, P Mydel, B Lenhard, F Müeller, ...
bioRxiv, 250621, 2018
12018
Predicting Binding Sites of Hepatitis C Virus Complexes Using Residue Binding Propensity and Sequence Entropy
GZ Zhang, C Nepal, K Han
International Conference on Computational Science, 78-85, 2007
12007
Ancestrally duplicated conserved noncoding element suggests dual regulatory roles of HOTAIR in cis and trans
C Nepal, A Taranta, Y Hadzhiev, S Pundhir, P Mydel, B Lenhard, F Müller, ...
Iscience, 101008, 2020
2020
Intertwined canonical and non-canonical initiation in dual promoters are pervasive and differentially regulate Polymerase II transcription
C Nepal, Y Hadzhiev, E Tarifeño-Saldivia, R Cardenas, AM Suzuki, ...
bioRxiv, 487496, 2018
2018
Regulatory mechanisms of non-coding RNAs during zebrafish embryogenesis
C Nepal
The University of Bergen, 2013
2013
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Articles 1–20