| Plant pangenomics: approaches, applications and advancements MF Danilevicz, CGT Fernandez, JI Marsh, PE Bayer, D Edwards Current opinion in plant biology 54, 18-25, 2020 | 113 | 2020 |
| Induced methylation in plants as a crop improvement tool: progress and perspectives C Mercé, PE Bayer, C Tay Fernandez, J Batley, D Edwards Agronomy 10 (10), 1484, 2020 | 32 | 2020 |
| Pangenomes as a resource to accelerate breeding of under-utilised crop species CG Tay Fernandez, BJ Nestor, MF Danilevicz, M Gill, J Petereit, PE Bayer, ... International Journal of Molecular Sciences 23 (5), 2671, 2022 | 22 | 2022 |
| Expanding gene-editing potential in crop improvement with pangenomes CG Tay Fernandez, BJ Nestor, MF Danilevicz, JI Marsh, J Petereit, ... International Journal of Molecular Sciences 23 (4), 2276, 2022 | 20 | 2022 |
| Pangenomics and crop genome adaptation in a changing climate J Petereit, PE Bayer, WJW Thomas, CG Tay Fernandez, J Amas, Y Zhang, ... Plants 11 (15), 1949, 2022 | 16 | 2022 |
| Legume pangenome construction using an iterative mapping and assembly approach H Hu, Y Yuan, PE Bayer, CT Fernandez, A Scheben, AA Golicz, ... Legume Genomics: Methods and Protocols, 35-47, 2020 | 16 | 2020 |
| The global assessment of oilseed Brassica crop species yield, yield stability and the underlying genetics JD Zandberg, CT Fernandez, MF Danilevicz, WJW Thomas, D Edwards, ... Plants 11 (20), 2740, 2022 | 12 | 2022 |
| Studying the genetic diversity of yam bean using a new draft genome assembly CG Tay Fernandez, K Pati, AA Severn-Ellis, J Batley, D Edwards Agronomy 11 (5), 953, 2021 | 12 | 2021 |
| An SGSGeneloss-based method for constructing a gene presence–absence table using mosdepth CG Tay Fernandez, JI Marsh, BJ Nestor, M Gill, AA Golicz, PE Bayer, ... Plant Comparative Genomics, 73-80, 2022 | 7 | 2022 |
| Legume‐wide comparative analysis of pod shatter locus PDH1 reveals phaseoloid specificity, high cowpea expression, and stress responsive genomic context JI Marsh, BJ Nestor, J Petereit, CG Tay Fernandez, PE Bayer, J Batley, ... The Plant Journal 115 (1), 68-80, 2023 | 6 | 2023 |
| Approaches to increase the validity of gene family identification using manual homology search tools BJ Nestor, PE Bayer, CGT Fernandez, D Edwards, PM Finnegan Genetica 151 (6), 325-338, 2023 | 4 | 2023 |
| DNABERT-based explainable lncRNA identification in plant genome assemblies MF Danilevicz, M Gill, CGT Fernandez, J Petereit, SR Upadhyaya, ... Computational and Structural Biotechnology Journal 21, 5676-5685, 2023 | 4 | 2023 |
| Evaluating plant gene models using machine learning SR Upadhyaya, PE Bayer, CG Tay Fernandez, J Petereit, J Batley, ... Plants 11 (12), 1619, 2022 | 4 | 2022 |
| High-throughput genotyping technologies in plant taxonomy MF Danilevicz, CG Tay Fernandez, JI Marsh, PE Bayer, D Edwards Molecular Plant Taxonomy: Methods and Protocols, 149-166, 2021 | 2 | 2021 |
| Method for genome-wide association study: A soybean example R Anderson, CT Fernandez, Y Yuan, AA Golicz, D Edwards, PE Bayer Legume Genomics: Methods and Protocols, 147-158, 2020 | 2 | 2020 |
| The conservation of gene models can support genome annotation CG Tay Fernandez, PE Bayer, J Petereit, R Varshney, J Batley, ... The plant genome 16 (3), e20377, 2023 | 1 | 2023 |
| crosshap: R package for local haplotype visualization for trait association analysis JI Marsh, J Petereit, BA Johnston, PE Bayer, CG Tay Fernandez, ... Bioinformatics 39 (8), btad518, 2023 | 1 | 2023 |
| Isolation and Sequencing of Chromosome Arm 7RS of Rye, Secale cereale J Petereit, C Tay Fernandez, JI Marsh, PE Bayer, WJW Thomas, ... International Journal of Molecular Sciences 23 (19), 11106, 2022 | 1 | 2022 |
| Making a pangenome using the iterative mapping approach C Tay Fernandez Plant Bioinformatics: Methods and Protocols, 259-271, 2022 | 1 | 2022 |
| Local haplotype visualization for trait association analysis with crosshap JI Marsh, J Petereit, BA Johnston, PE Bayer, CGT Fernandez, ... bioRxiv, 2023.05. 07.539781, 2023 | | 2023 |
