| A multi-algorithm, multi-timescale method for cell simulation K Takahashi, K Kaizu, B Hu, M Tomita Bioinformatics 20 (4), 538-546, 2004 | 249 | 2004 |
| SBML Level 3: an extensible format for the exchange and reuse of biological models SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ... Molecular systems biology 16 (8), e9110, 2020 | 204 | 2020 |
| Identification of mobile genetic elements with geNomad AP Camargo, S Roux, F Schulz, M Babinski, Y Xu, B Hu, PSG Chain, ... Nature Biotechnology, 1-10, 2023 | 72 | 2023 |
| Phosphorylation site dynamics of early T-cell receptor signaling LA Chylek, V Akimov, J Dengjel, KTG Rigbolt, B Hu, WS Hlavacek, ... PloS one 9 (8), e104240, 2014 | 72 | 2014 |
| Pathogen comparative genomics in the next-generation sequencing era: genome alignments, pangenomics and metagenomics B Hu, G Xie, CC Lo, SR Starkenburg, PSG Chain Briefings in functional genomics 10 (6), 322-333, 2011 | 69 | 2011 |
| Functionalization-dependent induction of cellular survival pathways by CdSe quantum dots in primary normal human bronchial epithelial cells A Nagy, JA Hollingsworth, B Hu, A Steinbruck, PC Stark, C Rios Valdez, ... ACS nano 7 (10), 8397-8411, 2013 | 57 | 2013 |
| Guidelines for visualizing and annotating rule-based models LA Chylek, B Hu, ML Blinov, T Emonet, JR Faeder, B Goldstein, ... Molecular BioSystems 7 (10), 2779-2795, 2011 | 57 | 2011 |
| Modeling Hsp70-mediated protein folding B Hu, MP Mayer, M Tomita Biophysical Journal 91 (2), 496-507, 2006 | 54 | 2006 |
| The national microbiome data collaborative: enabling microbiome science EM Wood-Charlson, Anubhav, D Auberry, H Blanco, MI Borkum, ... Nature Reviews Microbiology 18 (6), 313-314, 2020 | 50 | 2020 |
| Microbiome metadata standards: Report of the national microbiome data collaborative’s workshop and follow-on activities P Vangay, J Burgin, A Johnston, KL Beck, DC Berrios, K Blumberg, ... Msystems 6 (1), 10.1128/msystems. 01194-20, 2021 | 38 | 2021 |
| Hierarchical graphs for rule-based modeling of biochemical systems NW Lemons, B Hu, WS Hlavacek BMC bioinformatics 12, 1-13, 2011 | 29 | 2011 |
| The National Microbiome Data Collaborative Data Portal: an integrated multi-omics microbiome data resource EA Eloe-Fadrosh, F Ahmed, M Babinski, J Baumes, M Borkum, L Bramer, ... Nucleic Acids Research 50 (D1), D828-D836, 2022 | 25 | 2022 |
| Targeted metagenomics for clinical detection and discovery of bacterial tick-borne pathogens L Kingry, S Sheldon, S Oatman, B Pritt, M Anacker, J Bjork, D Neitzel, ... Journal of clinical microbiology 58 (11), 10.1128/jcm. 00147-20, 2020 | 24 | 2020 |
| Molecular dissection of induced platinum resistance through functional and gene expression analysis in a cell culture model of bladder cancer S Wang, H Zhang, TM Scharadin, M Zimmermann, B Hu, AW Pan, ... PloS one 11 (1), e0146256, 2016 | 21 | 2016 |
| The earth microbiome project: the meeting report for the 1st international earth microbiome project conference, Shenzhen, China, June 13th–15th 2011 JA Gilbert, M Bailey, D Field, N Fierer, JA Fuhrman, B Hu, J Jansson, ... Standards in Genomic Sciences 5, 243-247, 2011 | 21 | 2011 |
| GetBonNie for building, analyzing and sharing rule-based models B Hu, G Matthew Fricke, JR Faeder, RG Posner, WS Hlavacek Bioinformatics 25 (11), 1457-1460, 2009 | 20 | 2009 |
| SBML Level 3 package: multistate, multicomponent and multicompartment species, version 1, release 1 F Zhang, M Meier-Schellersheim Journal of integrative bioinformatics 15 (1), 20170077, 2018 | 16 | 2018 |
| EDGE COVID-19: a web platform to generate submission-ready genomes from SARS-CoV-2 sequencing efforts CC Lo, M Shakya, R Connor, K Davenport, M Flynn, AM Gutiérrez, B Hu, ... Bioinformatics 38 (10), 2700-2704, 2022 | 13 | 2022 |
| Functional and Structural Analysis of a Highly-Expressed Yersinia pestis Small RNA following Infection of Cultured Macrophages N Li, SP Hennelly, CJ Stubben, S Micheva-Viteva, B Hu, Y Shou, ... PLoS One 11 (12), e0168915, 2016 | 12 | 2016 |
| Microbiome metadata standards: report of the National Microbiome Data Collaborative’s Workshop and follow-on activities. mSystems 6: e01194-20 P Vangay, J Burgin, A Johnston, KL Beck, DC Berrios, K Blumberg, ... PubMed PubMed Central, 2021 | 11 | 2021 |
