Samantha Lycett
Samantha Lycett
Roslin Institiute, University of Edinburgh
Verified email at ed.ac.uk - Homepage
Title
Cited by
Cited by
Year
Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic
GJD Smith, D Vijaykrishna, J Bahl, SJ Lycett, M Worobey, OG Pybus, ...
Nature 459 (7250), 1122-1125, 2009
23842009
The genesis and source of the H7N9 influenza viruses causing human infections in China
TTY Lam, J Wang, Y Shen, B Zhou, L Duan, CL Cheung, C Ma, SJ Lycett, ...
Nature 502 (7470), 241-244, 2013
4492013
Automated analysis of phylogenetic clusters
M Ragonnet-Cronin, E Hodcroft, S Hué, E Fearnhill, V Delpech, ...
BMC bioinformatics 14 (1), 1-10, 2013
2292013
Fast dating using least-squares criteria and algorithms
TH To, M Jung, S Lycett, O Gascuel
Systematic biology 65 (1), 82-97, 2016
2152016
Transmission network parameters estimated from HIV sequences for a nationwide epidemic
AJ Leigh Brown, SJ Lycett, L Weinert, GJ Hughes, E Fearnhill, DT Dunn
Journal of Infectious Diseases 204 (9), 1463-1469, 2011
2082011
Circulating SARS-CoV-2 spike N439K variants maintain fitness while evading antibody-mediated immunity
EC Thomson, LE Rosen, JG Shepherd, R Spreafico, A da Silva Filipe, ...
Cell 184 (5), 1171-1187. e20, 2021
1962021
Molecular phylodynamics of the heterosexual HIV epidemic in the United Kingdom
GJ Hughes, E Fearnhill, D Dunn, SJ Lycett, A Rambaut, AJ Leigh Brown, ...
PLoS pathogens 5 (9), e1000590, 2009
1872009
Time resolved study of self‐assembled InAs quantum dots
H Yu, S Lycett, C Roberts, R Murray
Applied physics letters 69 (26), 4087-4089, 1996
1671996
Role for migratory wild birds in the global spread of avian influenza H5N8
Global Consortium for H5N8 and Related Influenza Viruses
Science 354 (6309), 213-217, 2016
1602016
Supersize me: how whole-genome sequencing and big data are transforming epidemiology
RR Kao, DT Haydon, SJ Lycett, PR Murcia
Trends in microbiology 22 (5), 282-291, 2014
1232014
Gene exchange drives the ecological success of a multi-host bacterial pathogen
EJ Richardson, R Bacigalupe, EM Harrison, LA Weinert, S Lycett, ...
Nature ecology & evolution 2 (9), 1468-1478, 2018
822018
Reassortment patterns of avian influenza virus internal segments among different subtypes
L Lu, SJ Lycett, AJL Brown
BMC evolutionary biology 14 (1), 1-15, 2014
822014
The short stalk length of highly pathogenic avian influenza H5N1 virus neuraminidase limits transmission of pandemic H1N1 virus in ferrets
D Blumenkrantz, KL Roberts, H Shelton, S Lycett, WS Barclay
Journal of virology 87 (19), 10539-10551, 2013
732013
Reassortment between influenza B lineages and the emergence of a coadapted PB1–PB2–HA gene complex
G Dudas, T Bedford, S Lycett, A Rambaut
Molecular biology and evolution 32 (1), 162-172, 2015
692015
Phylogenetic analyses reveal HIV-1 infections between men misclassified as heterosexual transmissions
S Hué, AE Brown, M Ragonnet-Cronin, SJ Lycett, DT Dunn, E Fearnhill, ...
Aids 28 (13), 1967-1975, 2014
672014
Detection of mammalian virulence determinants in highly pathogenic avian influenza H5N1 viruses: multivariate analysis of published data
SJ Lycett, MJ Ward, FI Lewis, AFY Poon, SL Kosakovsky Pond, ...
Journal of virology 83 (19), 9901-9910, 2009
652009
A brief history of bird flu
SJ Lycett, F Duchatel, P Digard
Philosophical Transactions of the Royal Society B 374 (1775), 20180257, 2019
612019
The circulating SARS-CoV-2 spike variant N439K maintains fitness while evading antibody-mediated immunity
EC Thomson, LE Rosen, JG Shepherd, R Spreafico, A da Silva Filipe, ...
BioRxiv, 2020
602020
The effect of the PB2 mutation 627K on highly pathogenic H5N1 avian influenza virus is dependent on the virus lineage
JS Long, WA Howard, A Núñez, O Moncorgé, S Lycett, J Banks, ...
Journal of virology 87 (18), 9983-9996, 2013
592013
Phylogenetic tools for generalized HIV-1 epidemics: findings from the PANGEA-HIV methods comparison
O Ratmann, EB Hodcroft, M Pickles, A Cori, M Hall, S Lycett, C Colijn, ...
Molecular biology and evolution 34 (1), 185-203, 2017
562017
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Articles 1–20