Bertil Schmidt
Bertil Schmidt
Professor of Computer Science, University of Mainz
Verified email at uni-mainz.de - Homepage
TitleCited byYear
CUDASW++: optimizing Smith-Waterman sequence database searches for CUDA-enabled graphics processing units
Y Liu, DL Maskell, B Schmidt
BMC research notes 2 (1), 73, 2009
3162009
CUDASW++ 2.0: enhanced Smith-Waterman protein database search on CUDA-enabled GPUs based on SIMT and virtualized SIMD abstractions
Y Liu, B Schmidt, DL Maskell
BMC research notes 3 (1), 93, 2010
2232010
Cooperative work and coordinative practices
K Schmidt
Cooperative Work and Coordinative Practices, 3-27, 2008
199*2008
Musket: a multistage k-mer spectrum-based error corrector for Illumina sequence data
Y Liu, J Schröder, B Schmidt
Bioinformatics 29 (3), 308-315, 2012
1982012
MSAProbs: multiple sequence alignment based on pair hidden Markov models and partition function posterior probabilities
Y Liu, B Schmidt, DL Maskell
Bioinformatics 26 (16), 1958-1964, 2010
1972010
Streaming algorithms for biological sequence alignment on GPUs
W Liu, B Schmidt, G Voss, W Muller-Wittig
IEEE transactions on parallel and distributed systems 18 (9), 1270-1281, 2007
1972007
CUDASW++ 3.0: accelerating Smith-Waterman protein database search by coupling CPU and GPU SIMD instructions
Y Liu, A Wirawan, B Schmidt
BMC bioinformatics 14 (1), 117, 2013
1862013
SHREC: a short-read error correction method
J Schröder, H Schröder, SJ Puglisi, R Sinha, B Schmidt
Bioinformatics 25 (17), 2157-2163, 2009
1832009
CUSHAW: a CUDA compatible short read aligner to large genomes based on the Burrows–Wheeler transform
Y Liu, B Schmidt, DL Maskell
Bioinformatics 28 (14), 1830-1837, 2012
1642012
Accelerating molecular dynamics simulations using Graphics Processing Units with CUDA
W Liu, B Schmidt, G Voss, W Müller-Wittig
Computer Physics Communications 179 (9), 634-641, 2008
1642008
Bio-sequence database scanning on a GPU
W Liu, B Schmidt, G Voss, A Schroder, W Muller-Wittig
Proceedings 20th IEEE International Parallel & Distributed Processing …, 2006
1402006
Hyper customized processors for bio-sequence database scanning on FPGAs
T Oliver, B Schmidt, D Maskell
Proceedings of the 2005 ACM/SIGDA 13th international symposium on Field …, 2005
1152005
Using reconfigurable hardware to accelerate multiple sequence alignment with ClustalW
T Oliver, B Schmidt, D Nathan, R Clemens, D Maskell
Bioinformatics 21 (16), 3431-3432, 2005
1102005
MSA-CUDA: multiple sequence alignment on graphics processing units with CUDA
Y Liu, B Schmidt, DL Maskell
2009 20th IEEE International Conference on Application-specific Systems …, 2009
1002009
Reconfigurable architectures for bio-sequence database scanning on FPGAs
TF Oliver, B Schmidt, DL Maskell
IEEE Transactions on Circuits and Systems II: Express Briefs 52 (12), 851-855, 2005
1002005
Long read alignment based on maximal exact match seeds
Y Liu, B Schmidt
Bioinformatics 28 (18), i318-i324, 2012
972012
CUDA-BLASTP: accelerating BLASTP on CUDA-enabled graphics hardware
W Liu, B Schmidt, W Muller-Wittig
IEEE/ACM Transactions on Computational Biology and Bioinformatics 8 (6 …, 2011
932011
CUDA–MEME: accelerating motif discovery in biological sequences using CUDA-enabled graphics processing units
Y Liu, B Schmidt, W Liu, DL Maskell
Pattern Recognition Letters 31 (14), 2170-2177, 2010
872010
Molecular dynamics simulations on commodity GPUs with CUDA
W Liu, B Schmidt, G Voss, W Müller-Wittig
International Conference on High-Performance Computing, 185-196, 2007
822007
Parallelized short read assembly of large genomes using de Bruijn graphs
Y Liu, B Schmidt, DL Maskell
BMC bioinformatics 12 (1), 354, 2011
782011
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